Variant report

Variant	rs1517554
Chromosome Location	chr4:82181810-82181811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:82005105..82005858-chr4:82181508..82182280,3	MCF-7	breast:
2	chr4:81990594..81991584-chr4:82181118..82182501,8	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10006067	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10488936	0.91[ASN][1000 genomes]
rs11722445	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11723613	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11725731	0.80[EUR][1000 genomes]
rs11938641	0.95[ASN][1000 genomes]
rs1377057	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1400746	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1443541	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1452365	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1467206	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1517550	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1517553	0.82[ASN][1000 genomes]
rs1568201	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1662837	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1662838	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1662839	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1662840	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1662842	0.91[ASN][1000 genomes]
rs1662843	0.91[ASN][1000 genomes]
rs1662844	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1662846	0.88[ASN][1000 genomes]
rs17005118	0.80[EUR][1000 genomes]
rs1712374	0.90[ASN][1000 genomes]
rs1712379	0.90[ASN][1000 genomes]
rs17427459	0.82[ASN][1000 genomes]
rs17427571	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs17499327	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17556750	0.90[ASN][1000 genomes]
rs1878528	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1975474	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2011962	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2034629	0.85[ASN][1000 genomes]
rs2034632	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2044211	0.82[ASN][1000 genomes]
rs2109662	0.80[EUR][1000 genomes]
rs2120301	0.82[ASN][1000 genomes]
rs2197271	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28661028	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2868182	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3098970	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3098972	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3098973	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3114136	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3114140	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4463061	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56075827	0.80[EUR][1000 genomes]
rs56123401	0.82[ASN][1000 genomes]
rs57222629	0.95[ASN][1000 genomes]
rs58877260	0.80[EUR][1000 genomes]
rs59498284	0.80[EUR][1000 genomes]
rs60825648	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61104118	0.82[ASN][1000 genomes]
rs61371439	0.95[ASN][1000 genomes]
rs62302272	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62302275	0.85[ASN][1000 genomes]
rs62302285	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62302286	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62302305	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62302308	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62302314	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6535240	0.95[ASN][1000 genomes]
rs6813437	0.93[ASN][1000 genomes]
rs710835	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs710838	0.84[ASN][1000 genomes]
rs710839	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs710840	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs710841	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7661369	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7691253	0.82[ASN][1000 genomes]
rs7698086	0.80[EUR][1000 genomes]
rs7699396	0.80[EUR][1000 genomes]
rs7699600	0.80[EUR][1000 genomes]
rs788855	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs788857	0.85[ASN][1000 genomes]
rs788861	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs788862	0.85[ASN][1000 genomes]
rs788863	0.84[ASN][1000 genomes]
rs788864	0.84[ASN][1000 genomes]
rs994014	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82175000-82183400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr4:82179600-82182200	Enhancers	Primary hematopoietic stem cells	blood
3	chr4:82180000-82183800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:82181800-82182200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:82181800-82182200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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