Variant report

Variant	rs60825648
Chromosome Location	chr4:82219662-82219663
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10006067	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10488936	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11722445	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11723613	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11723619	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11725731	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11732408	0.87[ASN][1000 genomes]
rs11938641	0.89[ASN][1000 genomes]
rs1377057	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1400746	0.85[ASN][1000 genomes]
rs1443541	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1452365	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1452374	0.82[AMR][1000 genomes]
rs1467206	0.81[ASN][1000 genomes]
rs1473160	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1517550	0.87[ASN][1000 genomes]
rs1517554	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1568201	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1662837	0.87[ASN][1000 genomes]
rs1662838	0.87[ASN][1000 genomes]
rs1662839	0.86[ASN][1000 genomes]
rs1662840	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1662842	0.87[ASN][1000 genomes]
rs1662843	0.87[ASN][1000 genomes]
rs1662844	0.86[ASN][1000 genomes]
rs1662846	0.84[ASN][1000 genomes]
rs17005118	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1712374	0.86[ASN][1000 genomes]
rs1712379	0.86[ASN][1000 genomes]
rs17427459	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17427571	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17499327	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17556750	0.86[ASN][1000 genomes]
rs1878528	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1975474	0.85[ASN][1000 genomes]
rs2011962	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2034629	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2034632	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2058368	0.87[ASN][1000 genomes]
rs2109662	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2197271	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2839753	0.91[EUR][1000 genomes]
rs28661028	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2868182	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3098970	0.87[ASN][1000 genomes]
rs3098972	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3098973	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3114136	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3114140	0.87[ASN][1000 genomes]
rs34347934	0.87[ASN][1000 genomes]
rs41501452	0.89[ASN][1000 genomes]
rs41515854	0.88[ASN][1000 genomes]
rs4463061	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56075827	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57222629	0.89[ASN][1000 genomes]
rs58877260	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59498284	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61371439	0.89[ASN][1000 genomes]
rs62302275	0.81[ASN][1000 genomes]
rs62302285	0.86[ASN][1000 genomes]
rs62302286	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62302305	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62302308	0.82[ASN][1000 genomes]
rs62302314	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62302352	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs62303570	0.81[ASN][1000 genomes]
rs6535240	0.89[ASN][1000 genomes]
rs6812825	0.87[ASN][1000 genomes]
rs6813437	0.91[ASN][1000 genomes]
rs6824784	0.87[ASN][1000 genomes]
rs710841	0.83[ASN][1000 genomes]
rs725826	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7656390	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7658313	0.81[ASN][1000 genomes]
rs7661369	0.87[ASN][1000 genomes]
rs7669368	0.84[ASN][1000 genomes]
rs7685840	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7696324	0.87[ASN][1000 genomes]
rs7698086	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7699396	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7699600	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs788857	0.81[ASN][1000 genomes]
rs788862	0.81[ASN][1000 genomes]
rs994014	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829985	chr4:82199328-82353656	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82219000-82220200	ZNF genes & repeats	Fetal Intestine Small	intestine
2	chr4:82219000-82220600	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links