Variant report

Variant	rs1712379
Chromosome Location	chr4:82154014-82154015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10006067	0.84[ASN][1000 genomes]
rs10488936	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11722445	0.86[ASN][1000 genomes]
rs11723613	0.86[ASN][1000 genomes]
rs11938641	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1377057	0.85[ASN][1000 genomes]
rs1400746	0.99[ASN][1000 genomes]
rs1443541	0.91[ASN][1000 genomes]
rs1452365	0.86[ASN][1000 genomes]
rs1467206	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1517550	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1517553	0.92[ASN][1000 genomes]
rs1517554	0.90[ASN][1000 genomes]
rs1568201	0.98[ASN][1000 genomes]
rs1662837	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1662838	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1662839	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1662840	0.99[ASN][1000 genomes]
rs1662842	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1662843	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1662844	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1662846	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1712374	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17427459	0.84[ASN][1000 genomes]
rs17427571	0.91[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17499327	0.86[ASN][1000 genomes]
rs17556750	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1822441	0.87[ASN][1000 genomes]
rs1878528	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1975474	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2011962	0.85[ASN][1000 genomes]
rs2034629	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2034632	0.86[ASN][1000 genomes]
rs2044211	0.92[ASN][1000 genomes]
rs2120301	0.92[ASN][1000 genomes]
rs2197271	0.99[ASN][1000 genomes]
rs28661028	0.94[ASN][1000 genomes]
rs2868182	0.98[ASN][1000 genomes]
rs3098970	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3098972	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3098973	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3114136	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3114140	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4463061	0.86[ASN][1000 genomes]
rs56123401	0.92[ASN][1000 genomes]
rs57222629	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60825648	0.86[ASN][1000 genomes]
rs61104118	0.92[ASN][1000 genomes]
rs61371439	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62302272	0.93[ASN][1000 genomes]
rs62302275	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62302285	0.98[ASN][1000 genomes]
rs62302286	0.99[ASN][1000 genomes]
rs62302305	0.98[ASN][1000 genomes]
rs62302308	0.90[ASN][1000 genomes]
rs62302314	0.86[ASN][1000 genomes]
rs62302352	0.81[ASN][1000 genomes]
rs6535240	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6813437	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs710835	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs710838	0.93[ASN][1000 genomes]
rs710839	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs710840	0.93[ASN][1000 genomes]
rs710841	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7661369	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7691253	0.92[ASN][1000 genomes]
rs788855	0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs788857	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs788861	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs788862	0.94[ASN][1000 genomes]
rs788863	0.93[ASN][1000 genomes]
rs788864	0.93[ASN][1000 genomes]
rs994014	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82153000-82157200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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