Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:82317438..82320291-chr4:82320653..82322618,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11732408	0.84[EUR][1000 genomes]
rs1452374	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1473160	0.84[EUR][1000 genomes]
rs17005118	0.87[ASN][1000 genomes]
rs17427571	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs17499732	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17499829	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17499843	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17500149	0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2058368	0.84[EUR][1000 genomes]
rs2839753	0.86[ASN][1000 genomes]
rs34347934	0.83[EUR][1000 genomes]
rs41501452	0.84[EUR][1000 genomes]
rs41515854	0.83[EUR][1000 genomes]
rs62302352	0.82[EUR][1000 genomes]
rs62303570	0.85[EUR][1000 genomes]
rs6812825	0.84[EUR][1000 genomes]
rs6824784	0.84[EUR][1000 genomes]
rs7658313	0.85[EUR][1000 genomes]
rs7669368	0.84[EUR][1000 genomes]
rs7696324	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829985	chr4:82199328-82353656	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv980406	chr4:82310479-82337709	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv517921	chr4:82315470-82346835	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82316600-82321000	Enhancers	Fetal Intestine Large	intestine
2	chr4:82317000-82320800	Enhancers	Fetal Intestine Small	intestine
3	chr4:82319600-82320400	Enhancers	Fetal Muscle Trunk	muscle
4	chr4:82319600-82321800	Enhancers	Fetal Muscle Leg	muscle

Quick Search: