Variant report

Variant	rs17500381
Chromosome Location	chr7:38662761-38662762
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38652231..38655268-chr7:38661915..38665252,3	K562	blood:
2	chr7:38661871..38664858-chr7:38665276..38668604,3	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10227883	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10228286	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10249504	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10249601	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10257029	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10257782	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10278693	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10282173	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13437692	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13437921	0.91[EUR][1000 genomes]
rs17171416	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17171420	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17171421	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17346292	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17415102	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17415529	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1864887	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1864888	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28393755	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28479083	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28504175	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28510981	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28549342	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28578669	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28754843	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4723775	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4723776	0.96[AMR][1000 genomes]
rs55633778	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73692926	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73692927	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38655400-38668400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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