Variant report

Variant	rs4723776
Chromosome Location	chr7:38670663-38670664
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17415102	0.88[AMR][1000 genomes]
rs17415529	0.85[AMR][1000 genomes]
rs17500381	0.96[AMR][1000 genomes]
rs4723775	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55633778	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38668000-38671400	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr7:38668400-38671400	Active TSS	Brain Angular Gyrus	brain
3	chr7:38668400-38671600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
4	chr7:38669600-38671000	Active TSS	Colon Smooth Muscle	Colon
5	chr7:38669600-38671200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr7:38669600-38671200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
7	chr7:38669800-38671200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
8	chr7:38669800-38671200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
9	chr7:38669800-38671400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
10	chr7:38669800-38671600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
11	chr7:38670000-38671200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:38670000-38671200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:38670000-38671200	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
14	chr7:38670000-38671200	Bivalent/Poised TSS	Psoas Muscle	Psoas
15	chr7:38670000-38671400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
16	chr7:38670000-38671400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:38670000-38671400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
18	chr7:38670000-38671400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:38670000-38671400	Active TSS	Brain Anterior Caudate	brain
20	chr7:38670000-38671400	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
21	chr7:38670000-38671400	Active TSS	Right Ventricle	heart
22	chr7:38670000-38671400	Active TSS	NH-A	brain
23	chr7:38670000-38671600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:38670200-38670800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr7:38670200-38671000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr7:38670200-38671000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
27	chr7:38670200-38671000	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
28	chr7:38670200-38671200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr7:38670200-38671200	Active TSS	H9 Cell Line	embryonic stem cell
30	chr7:38670200-38671200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr7:38670200-38671200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr7:38670200-38671200	Active TSS	Colonic Mucosa	Colon
33	chr7:38670200-38671200	Bivalent/Poised TSS	Fetal Thymus	thymus
34	chr7:38670200-38671200	Active TSS	Left Ventricle	heart
35	chr7:38670200-38671200	Active TSS	Rectal Smooth Muscle	rectum
36	chr7:38670200-38671200	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
37	chr7:38670200-38671200	Active TSS	NHDF-Ad	bronchial
38	chr7:38670200-38671400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
39	chr7:38670200-38671400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr7:38670200-38671400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
41	chr7:38670200-38671400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
42	chr7:38670200-38671400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
43	chr7:38670200-38671400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
44	chr7:38670200-38671400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr7:38670200-38671400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr7:38670200-38671400	Active TSS	Fetal Brain Female	brain
47	chr7:38670200-38671400	Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr7:38670200-38671400	Active TSS	Right Atrium	heart
49	chr7:38670200-38671400	Bivalent/Poised TSS	A549	lung
50	chr7:38670200-38671400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links