Variant report

Variant	rs17415529
Chromosome Location	chr7:38656608-38656609
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38652950..38655031-chr7:38656050..38658738,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10226563	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10227883	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10228286	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10249504	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10249601	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10257029	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10257782	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10278693	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10282173	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12539569	1.00[CEU][hapmap]
rs13437692	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13437921	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17171416	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17171420	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17171421	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17346292	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17415102	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17500060	1.00[CEU][hapmap]
rs17500381	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1864887	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1864888	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28393755	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28479083	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28504175	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28510981	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28549342	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28578669	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28754843	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4720293	1.00[CEU][hapmap]
rs4720295	1.00[CEU][hapmap]
rs4723774	1.00[CEU][hapmap]
rs4723775	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4723776	0.85[AMR][1000 genomes]
rs55633778	1.00[ASN][1000 genomes]
rs73692926	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73692927	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9986767	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38655400-38668400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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