Variant report
| Variant | rs12539569 |
|---|---|
| Chromosome Location | chr7:38644914-38644915 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:38643008..38645454-chr7:38647568..38650128,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs10226563 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10227883 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs10228286 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs10249504 | 0.83[EUR][1000 genomes] |
| rs10249601 | 0.83[EUR][1000 genomes] |
| rs10257029 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs10257782 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs10278693 | 0.83[EUR][1000 genomes] |
| rs10282173 | 0.83[EUR][1000 genomes] |
| rs12154506 | 1.00[ASN][1000 genomes] |
| rs13437692 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs13437921 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs17171416 | 0.83[EUR][1000 genomes] |
| rs17171420 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs17171421 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs17346292 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs17415102 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs17415529 | 1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs17500060 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs17500381 | 0.92[AMR][1000 genomes] |
| rs1864887 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs1864888 | 1.00[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs28393755 | 0.83[EUR][1000 genomes] |
| rs28479083 | 0.83[EUR][1000 genomes] |
| rs28504175 | 0.83[EUR][1000 genomes] |
| rs28510981 | 0.83[EUR][1000 genomes] |
| rs28549342 | 0.83[EUR][1000 genomes] |
| rs28578669 | 0.83[EUR][1000 genomes] |
| rs28754843 | 0.83[EUR][1000 genomes] |
| rs4720293 | 1.00[CEU][hapmap] |
| rs4720295 | 1.00[CEU][hapmap] |
| rs4723774 | 1.00[CEU][hapmap] |
| rs4723775 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes] |
| rs4723776 | 0.88[AMR][1000 genomes] |
| rs55633778 | 0.82[AMR][1000 genomes] |
| rs61584868 | 1.00[ASN][1000 genomes] |
| rs73692926 | 0.83[EUR][1000 genomes] |
| rs73692927 | 0.83[EUR][1000 genomes] |
| rs9986767 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv932229 | chr7:38248340-38727527 | Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv606674 | chr7:38619348-38655758 | Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
