Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10036304	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10051335	0.88[ASN][1000 genomes]
rs11241788	0.84[ASN][1000 genomes]
rs2033842	0.84[ASN][1000 genomes]
rs34348381	0.96[ASN][1000 genomes]
rs34519250	0.88[ASN][1000 genomes]
rs4590178	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56065010	0.88[ASN][1000 genomes]
rs56171860	0.83[ASN][1000 genomes]
rs6865099	0.83[ASN][1000 genomes]
rs6865632	0.83[ASN][1000 genomes]
rs6869646	0.84[ASN][1000 genomes]
rs6886317	0.83[ASN][1000 genomes]
rs6888003	0.84[ASN][1000 genomes]
rs6895171	0.92[ASN][1000 genomes]
rs7448847	0.96[ASN][1000 genomes]
rs7733868	0.83[ASN][1000 genomes]
rs7735615	1.00[ASN][1000 genomes]
rs893714	0.92[ASN][1000 genomes]
rs893715	0.92[ASN][1000 genomes]
rs893716	0.96[ASN][1000 genomes]
rs930417	0.96[ASN][1000 genomes]
rs9327349	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs953844	0.84[ASN][1000 genomes]
rs9686650	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124453600-124459800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:124454000-124456000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:124454400-124460000	Weak transcription	Dnd41	blood
4	chr5:124454800-124456200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr5:124454800-124456400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr5:124455000-124456200	Enhancers	H9 Cell Line	embryonic stem cell
7	chr5:124455000-124456400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr5:124455000-124456400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:124455000-124456600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr5:124455200-124456200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr5:124455200-124456200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr5:124455200-124456400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:124455400-124456000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:124455600-124456200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr5:124455600-124456600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr5:124455800-124456200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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