Variant report

Variant	rs893716
Chromosome Location	chr5:124463063-124463064
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10036304	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10040497	0.81[ASN][1000 genomes]
rs10050742	0.80[AMR][1000 genomes]
rs10051335	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10085148	0.82[EUR][1000 genomes]
rs1008776	0.81[ASN][1000 genomes]
rs11241788	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11241789	0.84[ASN][1000 genomes]
rs12189383	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12520570	0.81[ASN][1000 genomes]
rs13187207	0.81[ASN][1000 genomes]
rs1550361	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1550364	0.81[ASN][1000 genomes]
rs1550365	0.81[ASN][1000 genomes]
rs17515092	0.96[ASN][1000 genomes]
rs2033842	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2218125	0.80[ASN][1000 genomes]
rs34348381	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34519250	0.84[ASN][1000 genomes]
rs4590178	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56065010	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56171860	0.80[ASN][1000 genomes]
rs6865099	0.80[ASN][1000 genomes]
rs6865632	0.80[ASN][1000 genomes]
rs6869646	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6885185	0.81[ASN][1000 genomes]
rs6886317	0.80[ASN][1000 genomes]
rs6888003	0.88[ASN][1000 genomes]
rs6895171	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7448847	0.92[ASN][1000 genomes]
rs7721241	0.81[ASN][1000 genomes]
rs7733868	0.80[ASN][1000 genomes]
rs7735615	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs893714	0.88[ASN][1000 genomes]
rs893715	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs930417	0.92[ASN][1000 genomes]
rs9327349	0.81[EUR][1000 genomes]
rs953844	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9686650	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv599658	chr5:124459547-124513012	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124456200-124470000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:124456200-124470200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:124456400-124465000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr5:124461400-124465200	Weak transcription	NHDF-Ad	bronchial
5	chr5:124461400-124468200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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