Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10036304	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10051335	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11241788	0.84[ASN][1000 genomes]
rs17515092	1.00[ASN][1000 genomes]
rs2033842	0.84[ASN][1000 genomes]
rs34348381	0.96[ASN][1000 genomes]
rs34519250	0.88[ASN][1000 genomes]
rs4590178	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56065010	0.88[ASN][1000 genomes]
rs56171860	0.83[ASN][1000 genomes]
rs6865099	0.83[ASN][1000 genomes]
rs6865632	0.83[ASN][1000 genomes]
rs6869646	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6886317	0.83[ASN][1000 genomes]
rs6888003	0.84[ASN][1000 genomes]
rs6895171	0.92[ASN][1000 genomes]
rs7448847	0.96[ASN][1000 genomes]
rs7733868	0.83[ASN][1000 genomes]
rs893714	0.92[ASN][1000 genomes]
rs893715	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs893716	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs930417	0.96[ASN][1000 genomes]
rs9327349	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs953844	0.84[ASN][1000 genomes]
rs9686650	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv599658	chr5:124459547-124513012	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7735615	SNCAIP	cis	parietal	SCAN
rs7735615	FBXO36	trans	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124453600-124459800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:124454400-124460000	Weak transcription	Dnd41	blood
3	chr5:124456200-124470000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:124456200-124470200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr5:124456400-124459800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:124456400-124465000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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