Variant report

Variant	rs17517599
Chromosome Location	chr9:72410323-72410324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10521434	0.88[MEX][hapmap];0.80[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11140470	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12337927	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12347511	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1411408	0.88[EUR][1000 genomes]
rs1556208	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17439752	1.00[ASW][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];0.80[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17518030	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17518268	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4366141	0.88[MEX][hapmap];0.80[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7029206	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72721122	1.00[ASN][1000 genomes]
rs72723208	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72723215	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72723218	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72723219	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72723223	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7866489	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471309	chr9:72273898-72410323	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72408800-72412200	Enhancers	Fetal Lung	lung
2	chr9:72409400-72411800	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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