Variant report

Variant	rs17518030
Chromosome Location	chr9:72427646-72427647
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10521434	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140470	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12337927	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12347511	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411408	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1556208	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17439752	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17517599	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17518268	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4366141	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029206	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72723208	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72723215	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72723218	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72723219	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72723223	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7866489	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72424800-72435200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:72425600-72428200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr9:72425800-72428200	Enhancers	K562	blood
4	chr9:72426000-72428000	Weak transcription	Adipose Nuclei	Adipose
5	chr9:72426800-72428200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:72427000-72431200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr9:72427200-72428200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr9:72427400-72427800	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr9:72427600-72428000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr9:72427600-72428200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:72427600-72428200	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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