Variant report
| Variant | rs17523974 |
|---|---|
| Chromosome Location | chr4:21475938-21475939 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10014209 | 0.86[CEU][hapmap] |
| rs10516387 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap] |
| rs1460484 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1585423 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs16871128 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16871243 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs17464007 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs28850130 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs358584 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs358585 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs358591 | 1.00[CEU][hapmap] |
| rs56989378 | 0.96[ASN][1000 genomes] |
| rs57335220 | 0.96[ASN][1000 genomes] |
| rs60294689 | 0.96[ASN][1000 genomes] |
| rs62295500 | 0.81[EUR][1000 genomes] |
| rs62301286 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs6846958 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs73105830 | 0.96[ASN][1000 genomes] |
| rs73105834 | 0.96[ASN][1000 genomes] |
| rs73105836 | 0.96[ASN][1000 genomes] |
| rs73105840 | 0.96[ASN][1000 genomes] |
| rs73105849 | 0.96[ASN][1000 genomes] |
| rs73105853 | 0.96[ASN][1000 genomes] |
| rs73105855 | 0.96[ASN][1000 genomes] |
| rs73105858 | 0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013365 | chr4:20834054-21609078 | Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1014062 | chr4:21270358-21479027 | Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv829879 | chr4:21418568-21611002 | Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv998481 | chr4:21421945-21608805 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv593804 | chr4:21469139-21477084 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
