Variant report

Variant	rs17526294
Chromosome Location	chr4:22061205-22061206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10002092	0.83[EUR][1000 genomes]
rs10008058	0.82[EUR][1000 genomes]
rs10008233	0.82[EUR][1000 genomes]
rs10019107	0.83[EUR][1000 genomes]
rs10433826	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12501816	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13108588	0.81[EUR][1000 genomes]
rs13132801	0.86[EUR][1000 genomes]
rs2015779	0.82[EUR][1000 genomes]
rs2323259	0.83[EUR][1000 genomes]
rs2323303	0.82[EUR][1000 genomes]
rs2323304	0.82[EUR][1000 genomes]
rs34196510	0.82[EUR][1000 genomes]
rs34512134	0.85[EUR][1000 genomes]
rs34843622	0.82[EUR][1000 genomes]
rs34927464	0.86[EUR][1000 genomes]
rs4696999	0.86[EUR][1000 genomes]
rs4697263	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6448110	0.82[EUR][1000 genomes]
rs6448111	0.82[EUR][1000 genomes]
rs6448112	0.82[EUR][1000 genomes]
rs6448114	0.83[EUR][1000 genomes]
rs67235125	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6812374	0.81[EUR][1000 genomes]
rs68147450	0.84[EUR][1000 genomes]
rs6816518	0.82[EUR][1000 genomes]
rs6833673	0.82[EUR][1000 genomes]
rs6839252	0.82[EUR][1000 genomes]
rs7659568	0.83[EUR][1000 genomes]
rs7683680	0.83[EUR][1000 genomes]
rs7688595	0.83[EUR][1000 genomes]
rs7690132	0.82[EUR][1000 genomes]
rs925570	0.82[EUR][1000 genomes]
rs9291434	0.83[EUR][1000 genomes]
rs9992664	0.83[EUR][1000 genomes]
rs9996618	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv432584	chr4:22009677-22080362	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2757925	chr4:22011581-22230718	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2759232	chr4:22011581-22230718	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2757043	chr4:22017167-22090982	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv432585	chr4:22017218-22070731	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2754720	chr4:22044231-22070731	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1002048	chr4:22044637-22070701	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1014170	chr4:22045367-22068673	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv1002621	chr4:22045367-22070701	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv441862	chr4:22048633-22070701	Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	inside rSNPs	diseases
12	nsv997526	chr4:22048637-22068673	Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	inside rSNPs	diseases
13	nsv1008007	chr4:22048637-22070701	Weak transcription Enhancers ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
14	nsv1008804	chr4:22048637-22074534	Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	inside rSNPs	diseases
15	nsv1008770	chr4:22048637-22081876	Weak transcription Enhancers ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
16	esv2763810	chr4:22048637-22081888	Enhancers ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
17	nsv1010303	chr4:22048637-22086194	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	nsv997319	chr4:22049513-22070701	Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	inside rSNPs	diseases
19	esv2753441	chr4:22049670-22070701	Weak transcription Enhancers ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
20	esv2755826	chr4:22049670-22086194	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	esv2755083	chr4:22049670-22096199	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	nsv593810	chr4:22051944-22066818	Weak transcription Enhancers ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
23	nsv593811	chr4:22051944-22068673	Enhancers ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
24	nsv593812	chr4:22051944-22069379	Enhancers ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
25	nsv818224	chr4:22051944-22069379	Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	inside rSNPs	diseases
26	nsv593813	chr4:22051944-22070104	ZNF genes & repeats Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
27	nsv593814	chr4:22051944-22070701	Weak transcription Enhancers ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
28	nsv517719	chr4:22051944-22073768	Enhancers Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
29	nsv514202	chr4:22052486-22070542	Enhancers Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
30	nsv593815	chr4:22060315-22068673	Enhancers ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
31	nsv593816	chr4:22060315-22069379	Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	inside rSNPs	diseases
32	nsv593817	chr4:22060315-22070701	Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	inside rSNPs	diseases
33	nsv593818	chr4:22060732-22068673	Enhancers Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
34	nsv593819	chr4:22060732-22069379	ZNF genes & repeats Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
35	nsv593820	chr4:22060732-22070104	Weak transcription ZNF genes & repeats Enhancers	lncRNA	n/a	inside rSNPs	diseases
36	nsv593821	chr4:22060889-22068673	Weak transcription Enhancers ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17526294	NCAPG	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22059800-22066400	Weak transcription	Pancreas	Pancrea
2	chr4:22060800-22062200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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