Variant report

Variant	rs7659568
Chromosome Location	chr4:22031932-22031933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10433826	0.82[EUR][1000 genomes]
rs12501816	0.83[EUR][1000 genomes]
rs13108588	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13132801	0.94[EUR][1000 genomes]
rs1513574	0.97[EUR][1000 genomes]
rs17526294	0.83[EUR][1000 genomes]
rs2015779	0.99[EUR][1000 genomes]
rs34196510	0.99[EUR][1000 genomes]
rs34512134	0.93[EUR][1000 genomes]
rs34843622	0.99[EUR][1000 genomes]
rs34927464	0.94[EUR][1000 genomes]
rs4696999	0.94[EUR][1000 genomes]
rs4697263	0.83[EUR][1000 genomes]
rs67235125	0.81[EUR][1000 genomes]
rs68147450	0.92[EUR][1000 genomes]
rs6833673	0.99[EUR][1000 genomes]
rs6839252	0.99[EUR][1000 genomes]
rs925570	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv432584	chr4:22009677-22080362	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2757925	chr4:22011581-22230718	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2759232	chr4:22011581-22230718	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2757043	chr4:22017167-22090982	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv432585	chr4:22017218-22070731	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv435775	chr4:22026385-22032731	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3343124	chr4:22031922-22032297	Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7659568	NCAPG	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22031000-22032000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr4:22031000-22032200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr4:22031200-22032400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:22031600-22032000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:22031600-22032200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:22031800-22032000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr4:22031800-22032200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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