Variant report

Variant	rs17576899
Chromosome Location	chr1:184346241-184346242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10911585	0.97[EUR][1000 genomes]
rs10911586	0.97[EUR][1000 genomes]
rs12116705	1.00[EUR][1000 genomes]
rs12123538	0.97[EUR][1000 genomes]
rs12130008	0.82[EUR][1000 genomes]
rs12131730	0.90[EUR][1000 genomes]
rs12132220	0.85[EUR][1000 genomes]
rs12136470	0.82[EUR][1000 genomes]
rs12140904	0.97[EUR][1000 genomes]
rs12354368	1.00[EUR][1000 genomes]
rs13374592	0.92[EUR][1000 genomes]
rs17577247	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56173711	0.92[EUR][1000 genomes]
rs60650088	0.92[EUR][1000 genomes]
rs6699949	0.86[EUR][1000 genomes]
rs74131663	0.82[EUR][1000 genomes]
rs9803754	0.92[EUR][1000 genomes]
rs9804057	0.92[EUR][1000 genomes]
rs9970469	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv3821	chr1:184319543-184365236	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184337400-184355000	Weak transcription	Psoas Muscle	Psoas
2	chr1:184345800-184346400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr1:184346000-184355000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:184346200-184347800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:184346200-184348000	Weak transcription	NHDF-Ad	bronchial
6	chr1:184346200-184355000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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