Variant report

Variant	rs17577247
Chromosome Location	chr1:184352082-184352083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:184348421..184352484-chr1:184354779..184358416,5	MCF-7	breast:
2	chr1:184347794..184350297-chr1:184351548..184353524,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271387	Chromatin interaction
ENSG00000116667	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10911585	0.97[EUR][1000 genomes]
rs10911586	0.97[EUR][1000 genomes]
rs11799574	1.00[CEU][hapmap]
rs12116705	1.00[EUR][1000 genomes]
rs12123538	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs12128343	1.00[CEU][hapmap]
rs12128424	1.00[CEU][hapmap]
rs12129504	1.00[CEU][hapmap]
rs12130008	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12131730	0.90[EUR][1000 genomes]
rs12132220	0.85[EUR][1000 genomes]
rs12136470	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12140904	0.97[EUR][1000 genomes]
rs12142568	1.00[CEU][hapmap]
rs12145326	1.00[CEU][hapmap]
rs12354368	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13374592	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs16823133	1.00[CEU][hapmap]
rs17576899	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56173711	0.92[EUR][1000 genomes]
rs60650088	0.92[EUR][1000 genomes]
rs6699949	0.86[EUR][1000 genomes]
rs74131663	0.82[EUR][1000 genomes]
rs9803754	0.92[EUR][1000 genomes]
rs9804057	0.92[EUR][1000 genomes]
rs9970469	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv3821	chr1:184319543-184365236	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184337400-184355000	Weak transcription	Psoas Muscle	Psoas
2	chr1:184346000-184355000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:184346200-184355000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:184348400-184352200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr1:184348400-184355000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:184348800-184355000	Weak transcription	Fetal Heart	heart
7	chr1:184348800-184355000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr1:184349000-184355000	Weak transcription	NHLF	lung
9	chr1:184350400-184355000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:184350400-184355000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr1:184350600-184352800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:184350600-184354600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:184350600-184355000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr1:184351800-184353000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr1:184351800-184353800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
16	chr1:184351800-184354000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr1:184351800-184354600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr1:184351800-184354800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr1:184352000-184354400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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