Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10911585	0.84[EUR][1000 genomes]
rs10911586	0.84[EUR][1000 genomes]
rs11799574	1.00[CEU][hapmap]
rs12116705	0.86[EUR][1000 genomes]
rs12123538	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12128343	1.00[CEU][hapmap]
rs12128424	1.00[CEU][hapmap]
rs12129504	1.00[CEU][hapmap]
rs12130008	1.00[CEU][hapmap]
rs12136470	1.00[CEU][hapmap]
rs12140904	0.84[EUR][1000 genomes]
rs12142568	1.00[CEU][hapmap]
rs12145326	1.00[CEU][hapmap]
rs12354368	0.86[EUR][1000 genomes]
rs13374592	1.00[CEU][hapmap]
rs16823065	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.82[ASN][1000 genomes]
rs16823118	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap]
rs16823133	1.00[CEU][hapmap]
rs16823145	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17576899	0.86[EUR][1000 genomes]
rs17577247	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2207524	1.00[CHB][hapmap]
rs2378842	1.00[CHB][hapmap]
rs3814334	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3922451	0.82[ASN][1000 genomes]
rs4387139	0.96[ASN][1000 genomes]
rs59598210	0.82[ASN][1000 genomes]
rs6683308	0.94[ASN][1000 genomes]
rs6695258	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs6698504	0.88[CHD][hapmap]
rs7525041	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[MEX][hapmap];0.82[ASN][1000 genomes]
rs7540074	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap]
rs9970469	1.00[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv3821	chr1:184319543-184365236	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184337400-184355000	Weak transcription	Psoas Muscle	Psoas
2	chr1:184346000-184355000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:184346200-184347800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:184346200-184348000	Weak transcription	NHDF-Ad	bronchial
5	chr1:184346200-184355000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:184346400-184351800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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