Variant report
| Variant | rs17578793 |
|---|---|
| Chromosome Location | chr12:103977542-103977543 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | MAFK | chr12:103976639-103977574 | GM12878 | blood: | n/a | chr12:103977019-103977033 chr12:103977016-103977036 chr12:103977021-103977036 chr12:103977018-103977034 |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:103972674..103974362-chr12:103976968..103979851,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| STAB2 | TF binding region |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs17494141 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17494169 | 1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17500749 | 1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4303317 | 1.00[ASN][1000 genomes] |
| rs4385985 | 1.00[ASN][1000 genomes] |
| rs4612909 | 1.00[ASN][1000 genomes] |
| rs697196 | 1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs697197 | 1.00[CHB][hapmap] |
| rs697198 | 1.00[CHB][hapmap] |
| rs703596 | 1.00[CHB][hapmap] |
| rs703597 | 1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs703605 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs703608 | 1.00[CHB][hapmap] |
| rs703611 | 1.00[CHB][hapmap] |
| rs7133148 | 1.00[CHB][hapmap] |
| rs831428 | 1.00[CHB][hapmap] |
| rs831429 | 1.00[CHB][hapmap] |
| rs831683 | 1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs831686 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs854249 | 1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
