Variant report

Variant	rs854249
Chromosome Location	chr12:103988590-103988591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11833689	0.90[YRI][hapmap]
rs17494141	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17494169	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17500749	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17578793	1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4303317	1.00[ASN][1000 genomes]
rs4385985	1.00[ASN][1000 genomes]
rs4612909	1.00[ASN][1000 genomes]
rs697196	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs697197	1.00[CHB][hapmap]
rs697198	1.00[CHB][hapmap]
rs703596	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs703597	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs703605	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs703608	1.00[CHB][hapmap]
rs703611	0.83[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];0.87[TSI][hapmap]
rs7133148	1.00[CHB][hapmap]
rs831428	1.00[CHB][hapmap]
rs831429	1.00[CHB][hapmap]
rs831683	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs831686	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3391153	chr12:103983229-103989747	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103988400-104000400	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links