Variant report

Variant	rs7133148
Chromosome Location	chr12:104020115-104020116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17494169	1.00[CHB][hapmap]
rs17500749	1.00[CHB][hapmap]
rs17578793	1.00[CHB][hapmap]
rs697196	1.00[CHB][hapmap]
rs697197	1.00[CHB][hapmap]
rs697198	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs703596	1.00[CHB][hapmap]
rs703597	1.00[CHB][hapmap]
rs703608	1.00[CHB][hapmap]
rs703611	0.82[ASW][hapmap];1.00[CHB][hapmap]
rs831428	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs831429	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs831683	1.00[CHB][hapmap]
rs854249	1.00[CHB][hapmap]
rs860532	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052275	chr12:104008918-104044241	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7133148	NT5DC3	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104011600-104020800	Weak transcription	Spleen	Spleen
2	chr12:104016000-104022200	Weak transcription	Right Atrium	heart
3	chr12:104018000-104020400	Weak transcription	Colon Smooth Muscle	Colon
4	chr12:104020000-104021200	Enhancers	HSMM	muscle
5	chr12:104020000-104021600	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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