Variant report

Variant	rs175879
Chromosome Location	chr12:120186352-120186353
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:120185393..120188360-chr12:120191760..120195358,3	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1122119	0.95[ASN][1000 genomes]
rs1318272	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs175877	1.00[CEU][hapmap];0.97[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs202984	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs202985	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203327	0.94[CEU][hapmap];0.83[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2285595	0.83[CHB][hapmap]
rs2393550	0.81[JPT][hapmap];0.95[TSI][hapmap]
rs278103	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs278108	0.85[CEU][hapmap];0.95[GIH][hapmap];0.82[EUR][1000 genomes]
rs278109	0.82[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs278111	0.89[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs278115	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs278117	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs278118	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs278124	0.81[JPT][hapmap]
rs278128	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs278129	1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs278130	0.82[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs278131	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs278132	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs278133	0.80[CEU][hapmap];0.87[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.89[ASN][1000 genomes]
rs278134	0.89[ASN][1000 genomes]
rs278135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs278136	0.80[CEU][hapmap];0.87[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.89[ASN][1000 genomes]
rs278137	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs278139	0.86[EUR][1000 genomes]
rs278141	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs278142	0.89[CEU][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs2936830	0.83[CHB][hapmap]
rs2996027	0.82[CHB][hapmap]
rs2996028	0.82[CHB][hapmap]
rs3213625	0.83[CHB][hapmap]
rs3213626	0.83[CHB][hapmap]
rs3956827	0.94[ASN][1000 genomes]
rs402811	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs404447	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4766946	0.83[CHB][hapmap]
rs6490265	0.81[JPT][hapmap]
rs7131914	0.83[CHB][hapmap]
rs7299963	0.83[CHB][hapmap]
rs904654	0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs904655	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120116800-120201800	Weak transcription	Fetal Heart	heart
2	chr12:120143800-120211200	Weak transcription	Fetal Brain Male	brain
3	chr12:120149400-120224800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:120151600-120196600	Weak transcription	Gastric	stomach
5	chr12:120151800-120208400	Weak transcription	Fetal Brain Female	brain
6	chr12:120151800-120218600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr12:120154800-120209600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr12:120156600-120221400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr12:120158000-120186400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr12:120163600-120186400	Weak transcription	HUVEC	blood vessel
11	chr12:120172000-120189400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr12:120172200-120218600	Weak transcription	Fetal Kidney	kidney
13	chr12:120172600-120189600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr12:120173000-120194400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr12:120173400-120188600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr12:120173600-120188800	Weak transcription	NHEK	skin
17	chr12:120177600-120205200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr12:120178200-120205200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr12:120178400-120202200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr12:120180000-120187800	Weak transcription	Fetal Muscle Leg	muscle
21	chr12:120181800-120186800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr12:120182000-120189800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr12:120182200-120187400	Weak transcription	Hela-S3	cervix
24	chr12:120182600-120188600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr12:120183000-120186400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr12:120183200-120188000	Weak transcription	Primary B cells from cord blood	blood
27	chr12:120183800-120189800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr12:120184000-120186600	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr12:120184000-120207600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr12:120184200-120187400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr12:120184200-120195000	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr12:120184200-120202400	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr12:120184200-120224600	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr12:120184400-120188200	Weak transcription	Fetal Lung	lung
35	chr12:120184400-120205200	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr12:120184600-120187400	Weak transcription	HSMMtube	muscle
37	chr12:120184600-120188200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr12:120184600-120189800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr12:120184600-120193600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr12:120184600-120199000	Weak transcription	Primary T cells from cord blood	blood
41	chr12:120184800-120187000	Weak transcription	GM12878-XiMat	blood
42	chr12:120184800-120191800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr12:120184800-120192400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr12:120184800-120205400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr12:120185000-120186800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr12:120185400-120191000	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr12:120185400-120200400	Strong transcription	Thymus	Thymus
48	chr12:120185400-120227200	Strong transcription	Dnd41	blood
49	chr12:120185600-120187400	Strong transcription	H9 Cell Line	embryonic stem cell
50	chr12:120185600-120187800	Strong transcription	HepG2	liver

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