Variant report

Variant	rs278134
Chromosome Location	chr12:120191874-120191875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:120190675..120192435-chr12:120197085..120199402,2	K562	blood:
2	chr12:120106550..120108146-chr12:120191107..120193942,2	MCF-7	breast:
3	chr12:120185393..120188360-chr12:120191760..120195358,3	K562	blood:

Variant related genes	Relation type
ENSG00000111725	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10129003	0.80[ASN][1000 genomes]
rs1122119	0.84[ASN][1000 genomes]
rs1318272	0.85[ASN][1000 genomes]
rs175879	0.89[ASN][1000 genomes]
rs202984	0.89[EUR][1000 genomes]
rs202985	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs203326	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2074052	0.83[ASN][1000 genomes]
rs278108	0.88[EUR][1000 genomes]
rs278128	0.89[ASN][1000 genomes]
rs278129	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs278130	0.89[ASN][1000 genomes]
rs278131	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs278132	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs278133	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs278135	0.90[ASN][1000 genomes]
rs278136	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs278139	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs278142	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3956827	0.85[ASN][1000 genomes]
rs904654	0.85[ASN][1000 genomes]
rs904655	0.85[ASN][1000 genomes]

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120116800-120201800	Weak transcription	Fetal Heart	heart
2	chr12:120143800-120211200	Weak transcription	Fetal Brain Male	brain
3	chr12:120149400-120224800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:120151600-120196600	Weak transcription	Gastric	stomach
5	chr12:120151800-120208400	Weak transcription	Fetal Brain Female	brain
6	chr12:120151800-120218600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr12:120154800-120209600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr12:120156600-120221400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr12:120172200-120218600	Weak transcription	Fetal Kidney	kidney
10	chr12:120173000-120194400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr12:120177600-120205200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr12:120178200-120205200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr12:120178400-120202200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:120184000-120207600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr12:120184200-120195000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr12:120184200-120202400	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr12:120184200-120224600	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr12:120184400-120205200	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr12:120184600-120193600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr12:120184600-120199000	Weak transcription	Primary T cells from cord blood	blood
21	chr12:120184800-120192400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr12:120184800-120205400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr12:120185400-120200400	Strong transcription	Thymus	Thymus
24	chr12:120185400-120227200	Strong transcription	Dnd41	blood
25	chr12:120185600-120201000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr12:120185600-120202200	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr12:120185800-120201400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr12:120185800-120201600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr12:120185800-120202000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr12:120185800-120202400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr12:120185800-120214800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr12:120186000-120201200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr12:120186000-120202000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr12:120186000-120202400	Strong transcription	A549	lung
35	chr12:120186000-120214600	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr12:120186200-120193200	Weak transcription	Fetal Intestine Large	intestine
37	chr12:120186200-120205200	Strong transcription	Fetal Thymus	thymus
38	chr12:120186400-120194200	Weak transcription	Fetal Intestine Small	intestine
39	chr12:120186400-120199000	Strong transcription	Fetal Muscle Trunk	muscle
40	chr12:120186600-120202000	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr12:120186800-120198200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr12:120187000-120195200	Weak transcription	NH-A	brain
43	chr12:120187200-120193800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr12:120187200-120209200	Weak transcription	Placenta	Placenta
45	chr12:120187400-120194200	Weak transcription	Brain Germinal Matrix	brain
46	chr12:120187400-120196800	Weak transcription	Lung	lung
47	chr12:120187600-120218600	Weak transcription	Brain Hippocampus Middle	brain
48	chr12:120187800-120193400	Weak transcription	Brain Cingulate Gyrus	brain
49	chr12:120187800-120193800	Weak transcription	Spleen	Spleen
50	chr12:120187800-120211200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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