Variant report

Variant	rs203326
Chromosome Location	chr12:120203721-120203722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:120202473..120204751-chr12:120213864..120215939,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10129003	0.85[ASN][1000 genomes]
rs175877	0.87[CHB][hapmap]
rs202984	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs202985	0.89[EUR][1000 genomes]
rs203327	0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs203328	0.83[ASN][1000 genomes]
rs203329	0.91[CHB][hapmap]
rs203330	0.96[CHB][hapmap]
rs203331	0.91[CHB][hapmap]
rs203332	0.86[CHB][hapmap]
rs203364	0.83[CHB][hapmap]
rs203366	0.86[CHB][hapmap]
rs2074052	0.91[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs2285595	0.83[CHB][hapmap]
rs278108	0.87[EUR][1000 genomes]
rs278109	0.83[CHB][hapmap]
rs278117	0.81[ASN][1000 genomes]
rs278118	0.81[ASN][1000 genomes]
rs278129	0.89[EUR][1000 genomes]
rs278131	0.89[EUR][1000 genomes]
rs278132	0.89[EUR][1000 genomes]
rs278133	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs278134	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs278136	0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs278137	0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs278139	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs278141	0.83[ASN][1000 genomes]
rs278142	0.96[CHB][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2936830	0.84[CHB][hapmap]
rs2952403	0.82[ASN][1000 genomes]
rs2952444	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs2996027	0.83[CHB][hapmap]
rs2996028	0.82[CHB][hapmap]
rs2996029	0.96[CHB][hapmap]
rs3213625	0.83[CHB][hapmap]
rs3213626	0.84[CHB][hapmap]
rs385930	0.86[CHB][hapmap]
rs386259	0.87[CHB][hapmap]
rs402811	0.83[ASN][1000 genomes]
rs404447	0.81[ASN][1000 genomes]
rs4462403	0.86[CHB][hapmap]
rs4766946	0.84[CHB][hapmap]
rs4766947	0.95[CHB][hapmap]
rs4767839	0.95[CHB][hapmap]
rs6490269	0.96[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs7131914	0.83[CHB][hapmap]
rs7133437	0.85[CHB][hapmap]
rs7294387	0.85[ASN][1000 genomes]
rs7299963	0.83[CHB][hapmap]
rs7961569	0.95[CHB][hapmap]

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120143800-120211200	Weak transcription	Fetal Brain Male	brain
2	chr12:120149400-120224800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr12:120151800-120208400	Weak transcription	Fetal Brain Female	brain
4	chr12:120151800-120218600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr12:120154800-120209600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr12:120156600-120221400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:120172200-120218600	Weak transcription	Fetal Kidney	kidney
8	chr12:120177600-120205200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:120178200-120205200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr12:120184000-120207600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr12:120184200-120224600	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr12:120184400-120205200	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr12:120184800-120205400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr12:120185400-120227200	Strong transcription	Dnd41	blood
15	chr12:120185800-120214800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr12:120186000-120214600	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr12:120186200-120205200	Strong transcription	Fetal Thymus	thymus
18	chr12:120187200-120209200	Weak transcription	Placenta	Placenta
19	chr12:120187600-120218600	Weak transcription	Brain Hippocampus Middle	brain
20	chr12:120187800-120211200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr12:120188000-120228800	Weak transcription	HSMMtube	muscle
22	chr12:120188400-120205800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr12:120188400-120210600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr12:120189400-120225600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr12:120190000-120204800	Weak transcription	Esophagus	oesophagus
26	chr12:120190000-120244800	Weak transcription	Primary B cells from cord blood	blood
27	chr12:120190200-120210400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr12:120190200-120226400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr12:120191200-120235600	Weak transcription	Colonic Mucosa	Colon
30	chr12:120192200-120207800	Weak transcription	HSMM	muscle
31	chr12:120193400-120205400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr12:120193800-120208200	Weak transcription	Brain Angular Gyrus	brain
33	chr12:120195600-120223000	Weak transcription	Spleen	Spleen
34	chr12:120196400-120204000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr12:120196600-120204200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr12:120196800-120203800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr12:120196800-120207800	Weak transcription	NH-A	brain
38	chr12:120197000-120204600	Weak transcription	K562	blood
39	chr12:120197000-120207200	Weak transcription	HUVEC	blood vessel
40	chr12:120197000-120218600	Weak transcription	NHEK	skin
41	chr12:120197200-120207600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr12:120197200-120208600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr12:120197200-120209000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr12:120197200-120209000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr12:120197200-120209600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr12:120197200-120223200	Weak transcription	Gastric	stomach
47	chr12:120197400-120208600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr12:120197400-120209400	Weak transcription	Brain Germinal Matrix	brain
49	chr12:120198600-120209200	Weak transcription	Fetal Lung	lung
50	chr12:120198800-120207800	Weak transcription	HepG2	liver

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