Variant report

Variant	rs203331
Chromosome Location	chr12:120210270-120210271
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:120208689..120211170-chr12:120242508..120245374,3	MCF-7	breast:
2	chr12:120207397..120209074-chr12:120209205..120210864,2	K562	blood:
3	chr12:120209029..120211289-chr12:120216125..120218470,2	MCF-7	breast:
4	chr12:120209249..120211251-chr12:120213658..120215519,2	K562	blood:

Extended variants
information (count: 80 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10459141	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10849696	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11064906	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs11064911	0.91[EUR][1000 genomes]
rs12300601	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs1318272	0.80[GIH][hapmap];0.86[MEX][hapmap]
rs169408	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs175877	0.87[CHB][hapmap]
rs203326	0.91[CHB][hapmap]
rs203327	0.83[CHB][hapmap]
rs203328	0.81[ASN][1000 genomes]
rs203329	1.00[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.93[YRI][hapmap];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs203330	0.95[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs203332	1.00[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs203335	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs203352	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs203361	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs203364	0.88[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs203366	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs203368	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2074052	0.91[CHB][hapmap];0.82[GIH][hapmap];0.86[MEX][hapmap]
rs2240309	0.96[CEU][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes]
rs2240310	0.92[CEU][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes]
rs2285595	0.83[CHB][hapmap]
rs278109	0.83[CHB][hapmap]
rs278137	0.83[CHB][hapmap]
rs278142	0.86[CHB][hapmap]
rs2936830	0.83[CHB][hapmap]
rs2952444	0.91[CHB][hapmap];0.86[MEX][hapmap]
rs2996027	0.82[CHB][hapmap]
rs2996028	0.82[CHB][hapmap]
rs2996029	0.86[CHB][hapmap]
rs3213625	0.83[CHB][hapmap]
rs3213626	0.83[CHB][hapmap]
rs369180	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs3847957	0.92[CEU][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs385844	0.92[EUR][1000 genomes]
rs3858710	0.96[CEU][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes]
rs385930	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.96[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs385959	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs386259	0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs386928	0.92[EUR][1000 genomes]
rs390366	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs393773	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs394155	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs400551	0.89[CEU][hapmap];0.81[CHB][hapmap];0.92[EUR][1000 genomes]
rs405300	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs407464	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs407692	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs413236	0.92[EUR][1000 genomes]
rs432718	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs433091	0.96[CEU][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs440299	0.96[CEU][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes]
rs4462403	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4766946	0.83[CHB][hapmap]
rs4766947	0.85[CHB][hapmap]
rs4766948	0.92[EUR][1000 genomes]
rs4766949	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs4767839	0.86[CHB][hapmap]
rs4767843	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4767844	0.89[EUR][1000 genomes]
rs574142	0.92[EUR][1000 genomes]
rs574155	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6490269	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs679381	0.83[EUR][1000 genomes]
rs679773	0.81[EUR][1000 genomes]
rs7131914	0.83[CHB][hapmap]
rs7133437	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7136729	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7294387	0.87[ASN][1000 genomes]
rs7299963	0.83[CHB][hapmap]
rs7300010	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs7953072	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs7961569	0.86[CHB][hapmap]
rs7967982	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7969405	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs804716	0.92[EUR][1000 genomes]
rs804717	0.96[CEU][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes]
rs904654	0.86[MEX][hapmap]
rs904655	0.85[MEX][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs203331	FBXW8	cis	cerebellum	SCAN
rs203331	DYNLL1	cis	parietal	SCAN

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120143800-120211200	Weak transcription	Fetal Brain Male	brain
2	chr12:120149400-120224800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr12:120151800-120218600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr12:120156600-120221400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:120172200-120218600	Weak transcription	Fetal Kidney	kidney
6	chr12:120184200-120224600	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr12:120185400-120227200	Strong transcription	Dnd41	blood
8	chr12:120185800-120214800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr12:120186000-120214600	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr12:120187600-120218600	Weak transcription	Brain Hippocampus Middle	brain
11	chr12:120187800-120211200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr12:120188000-120228800	Weak transcription	HSMMtube	muscle
13	chr12:120188400-120210600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr12:120189400-120225600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:120190000-120244800	Weak transcription	Primary B cells from cord blood	blood
16	chr12:120190200-120210400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr12:120190200-120226400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr12:120191200-120235600	Weak transcription	Colonic Mucosa	Colon
19	chr12:120195600-120223000	Weak transcription	Spleen	Spleen
20	chr12:120197000-120218600	Weak transcription	NHEK	skin
21	chr12:120197200-120223200	Weak transcription	Gastric	stomach
22	chr12:120199200-120241000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr12:120202400-120220200	Weak transcription	Fetal Intestine Small	intestine
24	chr12:120203200-120212600	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr12:120203200-120214600	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr12:120203600-120222400	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr12:120204000-120224800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr12:120204800-120210600	Strong transcription	NHDF-Ad	bronchial
29	chr12:120205200-120222200	Weak transcription	Esophagus	oesophagus
30	chr12:120206200-120210800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr12:120206200-120212000	Weak transcription	Small Intestine	intestine
32	chr12:120206200-120214800	Strong transcription	A549	lung
33	chr12:120206400-120214800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr12:120206600-120213600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr12:120206600-120214200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr12:120206600-120214600	Strong transcription	Fetal Thymus	thymus
37	chr12:120206600-120214800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr12:120206600-120214800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr12:120206600-120216200	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr12:120207000-120210600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr12:120207000-120215400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr12:120207000-120224000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr12:120207200-120210800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr12:120207200-120211800	Strong transcription	Brain Anterior Caudate	brain
45	chr12:120207200-120213000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr12:120207400-120210400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr12:120207400-120210600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
48	chr12:120207600-120210600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr12:120207600-120210600	Strong transcription	NHLF	lung
50	chr12:120207600-120210800	Strong transcription	H1 Cell Line	embryonic stem cell

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