Variant report

Variant	rs393773
Chromosome Location	chr12:120220046-120220047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:120133826..120135360-chr12:120217778..120220518,2	MCF-7	breast:
2	chr12:120119419..120120944-chr12:120218866..120221340,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10459141	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10849696	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11064906	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11064911	0.94[EUR][1000 genomes]
rs12300601	0.88[EUR][1000 genomes]
rs169408	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs203329	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs203330	0.94[ASN][1000 genomes]
rs203331	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs203332	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs203335	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs203352	0.98[EUR][1000 genomes]
rs203361	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs203364	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs203366	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs203368	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2240309	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2240310	0.90[EUR][1000 genomes]
rs369180	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3847957	0.88[EUR][1000 genomes]
rs385844	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3858710	0.94[EUR][1000 genomes]
rs385930	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs385959	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs386259	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs386928	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs390366	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs394155	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs400551	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs405300	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs407464	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs407692	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs413236	0.95[EUR][1000 genomes]
rs432718	0.95[EUR][1000 genomes]
rs433091	0.95[EUR][1000 genomes]
rs440299	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4462403	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4766948	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4766949	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4767843	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4767844	0.93[EUR][1000 genomes]
rs574142	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs574155	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6490269	0.84[ASN][1000 genomes]
rs679381	0.87[EUR][1000 genomes]
rs679773	0.85[EUR][1000 genomes]
rs7133437	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7136729	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7294387	0.85[ASN][1000 genomes]
rs7300010	0.95[EUR][1000 genomes]
rs7953072	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7967982	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7969405	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs804716	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs804717	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120149400-120224800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr12:120156600-120221400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:120184200-120224600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr12:120185400-120227200	Strong transcription	Dnd41	blood
5	chr12:120188000-120228800	Weak transcription	HSMMtube	muscle
6	chr12:120189400-120225600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr12:120190000-120244800	Weak transcription	Primary B cells from cord blood	blood
8	chr12:120190200-120226400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr12:120191200-120235600	Weak transcription	Colonic Mucosa	Colon
10	chr12:120195600-120223000	Weak transcription	Spleen	Spleen
11	chr12:120197200-120223200	Weak transcription	Gastric	stomach
12	chr12:120199200-120241000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr12:120202400-120220200	Weak transcription	Fetal Intestine Small	intestine
14	chr12:120203600-120222400	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr12:120204000-120224800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr12:120205200-120222200	Weak transcription	Esophagus	oesophagus
17	chr12:120207000-120224000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr12:120208400-120220800	Weak transcription	NH-A	brain
19	chr12:120208600-120226600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr12:120209400-120293600	Weak transcription	Primary T cells from cord blood	blood
21	chr12:120209600-120220600	Weak transcription	Primary hematopoietic stem cells	blood
22	chr12:120209800-120220400	Weak transcription	HepG2	liver
23	chr12:120209800-120220400	Weak transcription	HSMM	muscle
24	chr12:120209800-120221200	Weak transcription	Duodenum Mucosa	Duodenum
25	chr12:120209800-120221400	Weak transcription	Brain Germinal Matrix	brain
26	chr12:120210000-120220200	Weak transcription	Hela-S3	cervix
27	chr12:120210000-120221200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr12:120210000-120223000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr12:120210000-120228800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr12:120210000-120235400	Weak transcription	Brain Angular Gyrus	brain
31	chr12:120210000-120239200	Weak transcription	Fetal Brain Female	brain
32	chr12:120210600-120220200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr12:120210600-120220200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr12:120210600-120221800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr12:120210600-120226600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr12:120210800-120220200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr12:120210800-120221400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr12:120210800-120231400	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr12:120213800-120226800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr12:120214600-120220200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr12:120214600-120220200	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr12:120214600-120220200	Weak transcription	Fetal Stomach	stomach
43	chr12:120214600-120220600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr12:120214600-120220800	Weak transcription	K562	blood
45	chr12:120214600-120241000	Weak transcription	Fetal Intestine Large	intestine
46	chr12:120214800-120220200	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr12:120214800-120220200	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr12:120214800-120220200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr12:120214800-120220600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr12:120214800-120221400	Weak transcription	Fetal Muscle Leg	muscle

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