Variant report

Variant	rs11064906
Chromosome Location	chr12:120223984-120223985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:120222364..120224082-chr12:120230207..120231860,2	MCF-7	breast:
2	chr12:120215930..120217571-chr12:120222437..120224449,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10459141	0.91[EUR][1000 genomes]
rs11064911	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11064919	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12300601	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12302281	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs169408	0.93[EUR][1000 genomes]
rs203331	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs203332	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs203335	0.89[EUR][1000 genomes]
rs203339	1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs203352	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs203361	0.96[EUR][1000 genomes]
rs203364	0.89[CEU][hapmap];0.80[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs203366	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs203368	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2240309	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2240310	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs369180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3847957	0.96[CEU][hapmap];0.86[CHB][hapmap];0.82[YRI][hapmap];0.92[EUR][1000 genomes]
rs385844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3858710	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs385930	0.96[CEU][hapmap];0.83[CHB][hapmap];0.96[EUR][1000 genomes]
rs385959	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs386259	1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[EUR][1000 genomes]
rs386928	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs390366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs393773	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs394155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs400551	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs405300	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs407464	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs407692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs413236	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs432718	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs433091	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];0.80[YRI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs440299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4462403	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4766948	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4766949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767843	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4767844	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs574142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs574155	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs679381	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs679773	0.88[EUR][1000 genomes]
rs7133437	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7136729	0.89[EUR][1000 genomes]
rs7300010	0.96[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7953072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7967982	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7969405	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs804716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs804717	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120149400-120224800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr12:120184200-120224600	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr12:120185400-120227200	Strong transcription	Dnd41	blood
4	chr12:120188000-120228800	Weak transcription	HSMMtube	muscle
5	chr12:120189400-120225600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr12:120190000-120244800	Weak transcription	Primary B cells from cord blood	blood
7	chr12:120190200-120226400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr12:120191200-120235600	Weak transcription	Colonic Mucosa	Colon
9	chr12:120199200-120241000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr12:120204000-120224800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr12:120207000-120224000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr12:120208600-120226600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr12:120209400-120293600	Weak transcription	Primary T cells from cord blood	blood
14	chr12:120210000-120228800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr12:120210000-120235400	Weak transcription	Brain Angular Gyrus	brain
16	chr12:120210000-120239200	Weak transcription	Fetal Brain Female	brain
17	chr12:120210600-120226600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr12:120210800-120231400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr12:120213800-120226800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr12:120214600-120241000	Weak transcription	Fetal Intestine Large	intestine
21	chr12:120215600-120224600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr12:120217200-120224800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr12:120217400-120225200	Strong transcription	Thymus	Thymus
24	chr12:120217800-120224600	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr12:120217800-120228600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr12:120218200-120224400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr12:120218800-120224600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr12:120218800-120226200	Weak transcription	Brain Hippocampus Middle	brain
29	chr12:120218800-120226600	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr12:120218800-120241000	Weak transcription	Fetal Kidney	kidney
31	chr12:120218800-120241200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr12:120219000-120241400	Weak transcription	NHEK	skin
33	chr12:120219200-120224000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr12:120219400-120224600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr12:120219400-120224800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr12:120220000-120224600	Strong transcription	A549	lung
37	chr12:120220000-120225000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr12:120220000-120240600	Weak transcription	Fetal Lung	lung
39	chr12:120220200-120224400	Strong transcription	H1 Cell Line	embryonic stem cell
40	chr12:120220200-120224600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr12:120220200-120224800	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr12:120220200-120225000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr12:120220200-120225000	Strong transcription	Fetal Stomach	stomach
44	chr12:120221600-120241000	Weak transcription	NH-A	brain
45	chr12:120221600-120241400	Weak transcription	HMEC	breast
46	chr12:120221800-120224600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr12:120221800-120241400	Weak transcription	HSMM	muscle
48	chr12:120222000-120226400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr12:120222000-120229200	Weak transcription	NHDF-Ad	bronchial
50	chr12:120222000-120231200	Weak transcription	K562	blood

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