Variant report

Variant	rs386259
Chromosome Location	chr12:120225712-120225713
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:120192900..120195362-chr12:120224387..120227353,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10459141	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10849696	0.94[ASN][1000 genomes]
rs11064906	1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[EUR][1000 genomes]
rs11064911	0.95[EUR][1000 genomes]
rs12300601	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12302281	0.82[CEU][hapmap]
rs169408	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs175877	0.82[CHB][hapmap]
rs203326	0.87[CHB][hapmap]
rs203329	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs203330	0.92[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs203331	0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs203332	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs203335	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs203339	0.83[CHB][hapmap]
rs203352	0.96[CEU][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs203361	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs203364	0.89[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs203366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs203368	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2074052	0.86[CHB][hapmap]
rs2240309	1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[EUR][1000 genomes]
rs2240310	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs278142	0.83[CHB][hapmap]
rs2952444	0.86[CHB][hapmap]
rs2996029	0.83[CHB][hapmap]
rs369180	1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[EUR][1000 genomes]
rs3847957	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs385844	0.96[EUR][1000 genomes]
rs3858710	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs385930	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs385959	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs386928	0.96[EUR][1000 genomes]
rs390366	1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[EUR][1000 genomes]
rs393773	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs394155	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[EUR][1000 genomes]
rs400551	0.93[CEU][hapmap];0.87[CHB][hapmap];0.96[EUR][1000 genomes]
rs405300	1.00[CEU][hapmap];0.82[CHB][hapmap];0.96[EUR][1000 genomes]
rs407464	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs407692	1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[EUR][1000 genomes]
rs413236	0.96[EUR][1000 genomes]
rs432718	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs433091	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs440299	1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[EUR][1000 genomes]
rs4462403	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4766947	0.80[CHB][hapmap]
rs4766948	0.96[EUR][1000 genomes]
rs4766949	1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[EUR][1000 genomes]
rs4767839	0.82[CHB][hapmap]
rs4767843	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4767844	0.93[EUR][1000 genomes]
rs574142	0.96[EUR][1000 genomes]
rs574155	0.96[EUR][1000 genomes]
rs6490269	0.92[CHB][hapmap];0.84[ASN][1000 genomes]
rs679381	0.87[EUR][1000 genomes]
rs679773	0.85[EUR][1000 genomes]
rs7133437	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7136729	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7294387	0.85[ASN][1000 genomes]
rs7300010	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs7953072	1.00[CEU][hapmap];0.84[CHB][hapmap];0.96[EUR][1000 genomes]
rs7961569	0.82[CHB][hapmap]
rs7967982	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7969405	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs804716	0.96[EUR][1000 genomes]
rs804717	1.00[CEU][hapmap];0.96[EUR][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120185400-120227200	Strong transcription	Dnd41	blood
2	chr12:120188000-120228800	Weak transcription	HSMMtube	muscle
3	chr12:120190000-120244800	Weak transcription	Primary B cells from cord blood	blood
4	chr12:120190200-120226400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:120191200-120235600	Weak transcription	Colonic Mucosa	Colon
6	chr12:120199200-120241000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr12:120208600-120226600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr12:120209400-120293600	Weak transcription	Primary T cells from cord blood	blood
9	chr12:120210000-120228800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr12:120210000-120235400	Weak transcription	Brain Angular Gyrus	brain
11	chr12:120210000-120239200	Weak transcription	Fetal Brain Female	brain
12	chr12:120210600-120226600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr12:120210800-120231400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr12:120213800-120226800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr12:120214600-120241000	Weak transcription	Fetal Intestine Large	intestine
16	chr12:120217800-120228600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr12:120218800-120226200	Weak transcription	Brain Hippocampus Middle	brain
18	chr12:120218800-120226600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr12:120218800-120241000	Weak transcription	Fetal Kidney	kidney
20	chr12:120218800-120241200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr12:120219000-120241400	Weak transcription	NHEK	skin
22	chr12:120220000-120240600	Weak transcription	Fetal Lung	lung
23	chr12:120221600-120241000	Weak transcription	NH-A	brain
24	chr12:120221600-120241400	Weak transcription	HMEC	breast
25	chr12:120221800-120241400	Weak transcription	HSMM	muscle
26	chr12:120222000-120226400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr12:120222000-120229200	Weak transcription	NHDF-Ad	bronchial
28	chr12:120222000-120231200	Weak transcription	K562	blood
29	chr12:120222000-120241200	Weak transcription	Duodenum Mucosa	Duodenum
30	chr12:120222400-120230400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr12:120222400-120231600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr12:120222800-120226400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr12:120222800-120229000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr12:120222800-120231200	Weak transcription	NHLF	lung
35	chr12:120222800-120241000	Weak transcription	Fetal Intestine Small	intestine
36	chr12:120223000-120226400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr12:120223000-120226400	Weak transcription	Hela-S3	cervix
38	chr12:120223000-120232200	Weak transcription	Fetal Muscle Trunk	muscle
39	chr12:120223000-120234200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr12:120223000-120239800	Weak transcription	Brain Germinal Matrix	brain
41	chr12:120223000-120255800	Weak transcription	HepG2	liver
42	chr12:120223000-120314400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr12:120223200-120226200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr12:120223200-120231200	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr12:120223200-120231200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr12:120223200-120231200	Weak transcription	Fetal Thymus	thymus
47	chr12:120223200-120231200	Weak transcription	GM12878-XiMat	blood
48	chr12:120223200-120239800	Weak transcription	Osteobl	bone
49	chr12:120223200-120242000	Weak transcription	HUVEC	blood vessel
50	chr12:120223400-120226200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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