Variant report

Variant	rs10849696
Chromosome Location	chr12:120209011-120209012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:120204046..120205814-chr12:120206318..120209149,2	MCF-7	breast:
2	chr12:120208689..120211170-chr12:120242508..120245374,3	MCF-7	breast:
3	chr12:120207397..120209074-chr12:120209205..120210864,2	K562	blood:
4	chr12:120207373..120209966-chr12:120331144..120333508,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10129003	0.83[EUR][1000 genomes]
rs10459141	0.89[ASN][1000 genomes]
rs1122119	0.88[EUR][1000 genomes]
rs1318272	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs169408	0.92[ASN][1000 genomes]
rs203327	0.82[ASN][1000 genomes]
rs203328	0.84[ASN][1000 genomes]
rs203329	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203330	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203331	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs203332	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs203335	0.90[ASN][1000 genomes]
rs203361	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs203364	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs203366	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs203368	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2074052	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs278110	0.83[EUR][1000 genomes]
rs2952403	0.84[EUR][1000 genomes]
rs2952444	0.84[EUR][1000 genomes]
rs385930	0.94[ASN][1000 genomes]
rs386259	0.94[ASN][1000 genomes]
rs393773	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4462403	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4767843	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6490269	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7133437	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7136729	0.91[ASN][1000 genomes]
rs7294387	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7967982	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7969405	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs904654	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120143800-120211200	Weak transcription	Fetal Brain Male	brain
2	chr12:120149400-120224800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr12:120151800-120218600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr12:120154800-120209600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr12:120156600-120221400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:120172200-120218600	Weak transcription	Fetal Kidney	kidney
7	chr12:120184200-120224600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr12:120185400-120227200	Strong transcription	Dnd41	blood
9	chr12:120185800-120214800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr12:120186000-120214600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr12:120187200-120209200	Weak transcription	Placenta	Placenta
12	chr12:120187600-120218600	Weak transcription	Brain Hippocampus Middle	brain
13	chr12:120187800-120211200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr12:120188000-120228800	Weak transcription	HSMMtube	muscle
15	chr12:120188400-120210600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr12:120189400-120225600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr12:120190000-120244800	Weak transcription	Primary B cells from cord blood	blood
18	chr12:120190200-120210400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr12:120190200-120226400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr12:120191200-120235600	Weak transcription	Colonic Mucosa	Colon
21	chr12:120195600-120223000	Weak transcription	Spleen	Spleen
22	chr12:120197000-120218600	Weak transcription	NHEK	skin
23	chr12:120197200-120209600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr12:120197200-120223200	Weak transcription	Gastric	stomach
25	chr12:120197400-120209400	Weak transcription	Brain Germinal Matrix	brain
26	chr12:120198600-120209200	Weak transcription	Fetal Lung	lung
27	chr12:120199200-120241000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr12:120202400-120220200	Weak transcription	Fetal Intestine Small	intestine
29	chr12:120203200-120212600	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr12:120203200-120214600	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr12:120203600-120222400	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr12:120203800-120210000	Strong transcription	Hela-S3	cervix
33	chr12:120204000-120224800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr12:120204800-120210600	Strong transcription	NHDF-Ad	bronchial
35	chr12:120205200-120222200	Weak transcription	Esophagus	oesophagus
36	chr12:120206200-120210800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr12:120206200-120212000	Weak transcription	Small Intestine	intestine
38	chr12:120206200-120214800	Strong transcription	A549	lung
39	chr12:120206400-120214800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr12:120206600-120209600	Strong transcription	Primary hematopoietic stem cells	blood
41	chr12:120206600-120213600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr12:120206600-120214200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr12:120206600-120214600	Strong transcription	Fetal Thymus	thymus
44	chr12:120206600-120214800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr12:120206600-120214800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr12:120206600-120216200	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr12:120206800-120210000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr12:120207000-120210600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr12:120207000-120215400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr12:120207000-120224000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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