Variant report

Variant	rs6490269
Chromosome Location	chr12:120207175-120207176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:120204046..120205814-chr12:120206318..120209149,2	MCF-7	breast:
2	chr12:120197756..120201028-chr12:120204910..120208233,3	K562	blood:
3	chr12:120206274..120208311-chr12:120215878..120218442,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10129003	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10459141	0.81[ASN][1000 genomes]
rs10849696	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11064884	0.81[EUR][1000 genomes]
rs1122119	0.85[EUR][1000 genomes]
rs1318272	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs169408	0.83[ASN][1000 genomes]
rs175877	0.83[CHB][hapmap]
rs203326	0.96[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs203328	0.82[ASN][1000 genomes]
rs203329	0.96[CEU][hapmap];0.95[CHB][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs203330	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs203331	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs203332	0.91[CHB][hapmap];0.87[ASN][1000 genomes]
rs203335	0.81[ASN][1000 genomes]
rs203361	0.85[ASN][1000 genomes]
rs203364	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs203366	0.91[CHB][hapmap];0.85[ASN][1000 genomes]
rs203368	0.85[ASN][1000 genomes]
rs2074052	0.96[CEU][hapmap];0.95[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2285595	0.82[CEU][hapmap]
rs278110	0.91[EUR][1000 genomes]
rs278139	0.84[ASN][1000 genomes]
rs278142	0.92[CHB][hapmap];0.85[ASN][1000 genomes]
rs2936830	0.83[CEU][hapmap];0.80[CHB][hapmap]
rs2952403	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2952444	0.96[CEU][hapmap];0.95[CHB][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2996027	0.82[CEU][hapmap]
rs2996028	0.93[CEU][hapmap]
rs2996029	0.86[CEU][hapmap];0.92[CHB][hapmap]
rs3213625	0.83[CEU][hapmap]
rs3213626	0.83[CEU][hapmap];0.80[CHB][hapmap]
rs385930	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs386259	0.92[CHB][hapmap];0.84[ASN][1000 genomes]
rs393773	0.84[ASN][1000 genomes]
rs4462403	0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4766946	0.89[CEU][hapmap];0.80[CHB][hapmap]
rs4766947	0.96[CEU][hapmap];0.90[CHB][hapmap]
rs4767839	0.86[CEU][hapmap];0.91[CHB][hapmap]
rs4767843	0.85[ASN][1000 genomes]
rs7131914	0.82[CEU][hapmap]
rs7133437	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs7136729	0.81[ASN][1000 genomes]
rs7294387	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7299963	0.82[CEU][hapmap]
rs7961569	0.85[CEU][hapmap];0.91[CHB][hapmap]
rs7967982	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7969405	0.85[ASN][1000 genomes]
rs904654	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120143800-120211200	Weak transcription	Fetal Brain Male	brain
2	chr12:120149400-120224800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr12:120151800-120208400	Weak transcription	Fetal Brain Female	brain
4	chr12:120151800-120218600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr12:120154800-120209600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr12:120156600-120221400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:120172200-120218600	Weak transcription	Fetal Kidney	kidney
8	chr12:120184000-120207600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr12:120184200-120224600	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr12:120185400-120227200	Strong transcription	Dnd41	blood
11	chr12:120185800-120214800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr12:120186000-120214600	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr12:120187200-120209200	Weak transcription	Placenta	Placenta
14	chr12:120187600-120218600	Weak transcription	Brain Hippocampus Middle	brain
15	chr12:120187800-120211200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr12:120188000-120228800	Weak transcription	HSMMtube	muscle
17	chr12:120188400-120210600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr12:120189400-120225600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr12:120190000-120244800	Weak transcription	Primary B cells from cord blood	blood
20	chr12:120190200-120210400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr12:120190200-120226400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr12:120191200-120235600	Weak transcription	Colonic Mucosa	Colon
23	chr12:120192200-120207800	Weak transcription	HSMM	muscle
24	chr12:120193800-120208200	Weak transcription	Brain Angular Gyrus	brain
25	chr12:120195600-120223000	Weak transcription	Spleen	Spleen
26	chr12:120196800-120207800	Weak transcription	NH-A	brain
27	chr12:120197000-120207200	Weak transcription	HUVEC	blood vessel
28	chr12:120197000-120218600	Weak transcription	NHEK	skin
29	chr12:120197200-120207600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr12:120197200-120208600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr12:120197200-120209000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr12:120197200-120209000	Weak transcription	Duodenum Mucosa	Duodenum
33	chr12:120197200-120209600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr12:120197200-120223200	Weak transcription	Gastric	stomach
35	chr12:120197400-120208600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr12:120197400-120209400	Weak transcription	Brain Germinal Matrix	brain
37	chr12:120198600-120209200	Weak transcription	Fetal Lung	lung
38	chr12:120198800-120207800	Weak transcription	HepG2	liver
39	chr12:120199000-120208200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr12:120199200-120241000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr12:120200000-120208800	Weak transcription	Primary T cells from cord blood	blood
42	chr12:120200000-120208800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr12:120200600-120207200	Weak transcription	Brain Anterior Caudate	brain
44	chr12:120200600-120207200	Weak transcription	Fetal Muscle Leg	muscle
45	chr12:120200600-120208400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr12:120201200-120207400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr12:120201200-120207600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr12:120201200-120207800	Weak transcription	HMEC	breast
49	chr12:120201400-120207600	Weak transcription	Fetal Muscle Trunk	muscle
50	chr12:120201400-120207600	Weak transcription	Fetal Stomach	stomach

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