Variant report

Variant	rs4766947
Chromosome Location	chr12:120161401-120161402
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:120119326..120121851-chr12:120158588..120161443,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10129003	0.83[ASN][1000 genomes]
rs10849691	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10849692	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11064884	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1122119	0.82[EUR][1000 genomes]
rs12296121	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1318272	1.00[CEU][hapmap]
rs175877	0.90[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs203326	0.95[CHB][hapmap]
rs203327	0.86[CHB][hapmap]
rs203329	0.96[CEU][hapmap];0.85[CHB][hapmap]
rs203330	0.96[CEU][hapmap];0.90[CHB][hapmap]
rs203331	0.85[CHB][hapmap]
rs2074052	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2285595	0.88[CEU][hapmap];0.86[CHB][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs278109	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs278110	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs278111	0.82[ASN][1000 genomes]
rs278115	0.80[ASN][1000 genomes]
rs278133	0.81[CHB][hapmap]
rs278136	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs278137	0.86[CHB][hapmap]
rs278139	0.85[ASN][1000 genomes]
rs278142	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs2936830	0.88[CEU][hapmap];0.86[CHB][hapmap];0.89[ASN][1000 genomes]
rs2936831	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2936832	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2952403	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2952444	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2996027	0.88[CEU][hapmap];0.85[CHB][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2996028	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2996029	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2996030	0.89[ASN][1000 genomes]
rs3213625	0.88[CEU][hapmap];0.86[CHB][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3213626	0.88[CEU][hapmap];0.86[CHB][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35070805	0.83[ASN][1000 genomes]
rs386259	0.80[CHB][hapmap]
rs4766946	0.88[CEU][hapmap];0.86[CHB][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4767839	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767841	0.93[ASN][1000 genomes]
rs6490269	0.96[CEU][hapmap];0.90[CHB][hapmap]
rs7131914	0.88[CEU][hapmap];0.86[CHB][hapmap];0.89[ASN][1000 genomes]
rs7132952	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7133437	0.83[CHB][hapmap]
rs7299963	0.88[CEU][hapmap];0.86[CHB][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7303046	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7961569	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs904654	1.00[CEU][hapmap]
rs904655	0.88[CEU][hapmap]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120116800-120201800	Weak transcription	Fetal Heart	heart
2	chr12:120121200-120173400	Weak transcription	Primary B cells from cord blood	blood
3	chr12:120123400-120182000	Strong transcription	Dnd41	blood
4	chr12:120130800-120182200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr12:120131200-120161600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr12:120132800-120162000	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr12:120143800-120211200	Weak transcription	Fetal Brain Male	brain
8	chr12:120145000-120168600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr12:120148400-120163400	Weak transcription	Brain Substantia Nigra	brain
10	chr12:120149400-120224800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr12:120151600-120196600	Weak transcription	Gastric	stomach
12	chr12:120151800-120208400	Weak transcription	Fetal Brain Female	brain
13	chr12:120151800-120218600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr12:120152600-120165200	Weak transcription	Primary T cells from cord blood	blood
15	chr12:120154000-120177200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr12:120154800-120164000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr12:120154800-120165800	Weak transcription	NHEK	skin
18	chr12:120154800-120167400	Weak transcription	HMEC	breast
19	chr12:120154800-120170600	Weak transcription	Fetal Kidney	kidney
20	chr12:120154800-120171400	Weak transcription	Brain Hippocampus Middle	brain
21	chr12:120154800-120173400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr12:120154800-120174600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr12:120154800-120186000	Weak transcription	NH-A	brain
24	chr12:120154800-120209600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr12:120155000-120162800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr12:120155000-120167800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr12:120155000-120170000	Weak transcription	Hela-S3	cervix
28	chr12:120155000-120171400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr12:120155000-120172800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr12:120156200-120168000	Weak transcription	Fetal Intestine Large	intestine
31	chr12:120156200-120171600	Weak transcription	Lung	lung
32	chr12:120156600-120163400	Weak transcription	HepG2	liver
33	chr12:120156600-120167800	Weak transcription	Fetal Intestine Small	intestine
34	chr12:120156600-120174000	Weak transcription	Esophagus	oesophagus
35	chr12:120156600-120221400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr12:120156800-120171800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr12:120156800-120173000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr12:120156800-120182600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr12:120157000-120163400	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr12:120157200-120165600	Weak transcription	Fetal Muscle Leg	muscle
41	chr12:120157800-120163400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr12:120157800-120165800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr12:120157800-120167800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr12:120157800-120170600	Weak transcription	NHLF	lung
45	chr12:120157800-120171400	Weak transcription	Fetal Lung	lung
46	chr12:120158000-120162800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr12:120158000-120163400	Weak transcription	Brain Anterior Caudate	brain
48	chr12:120158000-120163400	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr12:120158000-120165400	Weak transcription	Fetal Muscle Trunk	muscle
50	chr12:120158000-120165400	Weak transcription	GM12878-XiMat	blood

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