Variant report

Variant	rs203329
Chromosome Location	chr12:120209678-120209679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:120208689..120211170-chr12:120242508..120245374,3	MCF-7	breast:
2	chr12:120207397..120209074-chr12:120209205..120210864,2	K562	blood:
3	chr12:120207373..120209966-chr12:120331144..120333508,2	MCF-7	breast:
4	chr12:120209029..120211289-chr12:120216125..120218470,2	MCF-7	breast:
5	chr12:120209249..120211251-chr12:120213658..120215519,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10129003	0.82[EUR][1000 genomes]
rs10459141	0.89[ASN][1000 genomes]
rs10849696	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1122119	0.87[EUR][1000 genomes]
rs1318272	0.96[CEU][hapmap];0.87[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes]
rs169408	0.92[ASN][1000 genomes]
rs175877	0.87[CHB][hapmap];0.81[CHD][hapmap]
rs203326	0.91[CHB][hapmap]
rs203327	0.83[CHB][hapmap];0.84[CHD][hapmap];0.82[ASN][1000 genomes]
rs203328	0.84[ASN][1000 genomes]
rs203330	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs203331	1.00[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.90[MKK][hapmap];0.93[YRI][hapmap];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs203332	0.95[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.84[MKK][hapmap];0.82[TSI][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs203335	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs203343	0.84[CHD][hapmap]
rs203361	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs203364	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs203366	0.95[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs203368	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2074052	0.92[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2285595	0.85[CEU][hapmap];0.83[CHB][hapmap];0.80[CHD][hapmap];0.80[TSI][hapmap]
rs278109	0.83[CHB][hapmap];0.82[CHD][hapmap]
rs278110	0.82[EUR][1000 genomes]
rs278137	0.83[CHB][hapmap]
rs278142	0.86[CHB][hapmap]
rs2936830	0.85[CEU][hapmap];0.83[CHB][hapmap]
rs2952403	0.83[EUR][1000 genomes]
rs2952444	0.92[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.82[GIH][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs2996027	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs2996028	0.96[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];0.88[TSI][hapmap]
rs2996029	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs3213625	0.85[CEU][hapmap];0.83[CHB][hapmap]
rs3213626	0.85[CEU][hapmap];0.83[CHB][hapmap]
rs385930	0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs386259	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs393773	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs400551	0.81[CHB][hapmap]
rs4462403	0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.82[TSI][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4766946	0.88[CEU][hapmap];0.83[CHB][hapmap]
rs4766947	0.96[CEU][hapmap];0.85[CHB][hapmap]
rs4767839	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs4767843	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6490269	0.96[CEU][hapmap];0.95[CHB][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7131914	0.85[CEU][hapmap];0.83[CHB][hapmap];0.80[CHD][hapmap];0.80[TSI][hapmap]
rs7133437	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7136729	0.91[ASN][1000 genomes]
rs7294387	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7299963	0.85[CEU][hapmap];0.83[CHB][hapmap];0.80[CHD][hapmap];0.80[TSI][hapmap]
rs7961569	0.82[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap]
rs7967982	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7969405	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs904654	0.92[CEU][hapmap];0.84[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes]
rs904655	0.82[CEU][hapmap];0.84[GIH][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs203329	MLXIP	cis	cerebellum	SCAN

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120143800-120211200	Weak transcription	Fetal Brain Male	brain
2	chr12:120149400-120224800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr12:120151800-120218600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr12:120156600-120221400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:120172200-120218600	Weak transcription	Fetal Kidney	kidney
6	chr12:120184200-120224600	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr12:120185400-120227200	Strong transcription	Dnd41	blood
8	chr12:120185800-120214800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr12:120186000-120214600	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr12:120187600-120218600	Weak transcription	Brain Hippocampus Middle	brain
11	chr12:120187800-120211200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr12:120188000-120228800	Weak transcription	HSMMtube	muscle
13	chr12:120188400-120210600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr12:120189400-120225600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:120190000-120244800	Weak transcription	Primary B cells from cord blood	blood
16	chr12:120190200-120210400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr12:120190200-120226400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr12:120191200-120235600	Weak transcription	Colonic Mucosa	Colon
19	chr12:120195600-120223000	Weak transcription	Spleen	Spleen
20	chr12:120197000-120218600	Weak transcription	NHEK	skin
21	chr12:120197200-120223200	Weak transcription	Gastric	stomach
22	chr12:120199200-120241000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr12:120202400-120220200	Weak transcription	Fetal Intestine Small	intestine
24	chr12:120203200-120212600	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr12:120203200-120214600	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr12:120203600-120222400	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr12:120203800-120210000	Strong transcription	Hela-S3	cervix
28	chr12:120204000-120224800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr12:120204800-120210600	Strong transcription	NHDF-Ad	bronchial
30	chr12:120205200-120222200	Weak transcription	Esophagus	oesophagus
31	chr12:120206200-120210800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr12:120206200-120212000	Weak transcription	Small Intestine	intestine
33	chr12:120206200-120214800	Strong transcription	A549	lung
34	chr12:120206400-120214800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr12:120206600-120213600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr12:120206600-120214200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr12:120206600-120214600	Strong transcription	Fetal Thymus	thymus
38	chr12:120206600-120214800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr12:120206600-120214800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr12:120206600-120216200	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr12:120206800-120210000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr12:120207000-120210600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr12:120207000-120215400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr12:120207000-120224000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr12:120207200-120210000	Strong transcription	Brain Cingulate Gyrus	brain
46	chr12:120207200-120210000	Strong transcription	Fetal Muscle Leg	muscle
47	chr12:120207200-120210000	Strong transcription	HUVEC	blood vessel
48	chr12:120207200-120210800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr12:120207200-120211800	Strong transcription	Brain Anterior Caudate	brain
50	chr12:120207200-120213000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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