Variant report

Variant	rs278110
Chromosome Location	chr12:120172527-120172528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:120166136..120169033-chr12:120170815..120173425,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10129003	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10849691	0.83[ASN][1000 genomes]
rs10849692	0.82[ASN][1000 genomes]
rs10849696	0.83[EUR][1000 genomes]
rs11064884	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1122119	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12296121	0.84[ASN][1000 genomes]
rs1318272	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs203329	0.82[EUR][1000 genomes]
rs203330	0.83[EUR][1000 genomes]
rs2074052	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs278139	0.83[ASN][1000 genomes]
rs278142	0.83[ASN][1000 genomes]
rs2936832	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2952403	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2952444	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2996028	0.84[EUR][1000 genomes]
rs2996029	0.84[ASN][1000 genomes]
rs4766947	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4767839	0.84[ASN][1000 genomes]
rs6490269	0.91[EUR][1000 genomes]
rs7132952	0.83[ASN][1000 genomes]
rs7294387	0.91[EUR][1000 genomes]
rs7303046	0.82[ASN][1000 genomes]
rs7961569	0.83[ASN][1000 genomes]
rs904654	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120116800-120201800	Weak transcription	Fetal Heart	heart
2	chr12:120121200-120173400	Weak transcription	Primary B cells from cord blood	blood
3	chr12:120123400-120182000	Strong transcription	Dnd41	blood
4	chr12:120130800-120182200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr12:120143800-120211200	Weak transcription	Fetal Brain Male	brain
6	chr12:120149400-120224800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr12:120151600-120196600	Weak transcription	Gastric	stomach
8	chr12:120151800-120208400	Weak transcription	Fetal Brain Female	brain
9	chr12:120151800-120218600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr12:120154000-120177200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr12:120154800-120173400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr12:120154800-120174600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr12:120154800-120186000	Weak transcription	NH-A	brain
14	chr12:120154800-120209600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr12:120155000-120172800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr12:120156600-120174000	Weak transcription	Esophagus	oesophagus
17	chr12:120156600-120221400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr12:120156800-120173000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr12:120156800-120182600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr12:120158000-120173000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr12:120158000-120176800	Weak transcription	Spleen	Spleen
22	chr12:120158000-120186200	Weak transcription	Brain Germinal Matrix	brain
23	chr12:120158000-120186400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr12:120162800-120174400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr12:120163600-120186400	Weak transcription	HUVEC	blood vessel
26	chr12:120163800-120180000	Weak transcription	Brain Substantia Nigra	brain
27	chr12:120167400-120173600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr12:120167400-120176800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr12:120167600-120173400	Strong transcription	Thymus	Thymus
30	chr12:120168600-120181600	Weak transcription	GM12878-XiMat	blood
31	chr12:120169800-120173600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr12:120169800-120173600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr12:120169800-120173600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr12:120169800-120174400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr12:120170000-120173400	Strong transcription	H9 Cell Line	embryonic stem cell
36	chr12:120170000-120173400	Strong transcription	HMEC	breast
37	chr12:120170000-120173600	Strong transcription	Hela-S3	cervix
38	chr12:120170000-120173600	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr12:120170000-120173800	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr12:120170000-120173800	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr12:120170000-120174600	Strong transcription	NHDF-Ad	bronchial
42	chr12:120170200-120172600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr12:120170200-120173400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr12:120170200-120173600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr12:120170200-120174400	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr12:120170400-120173200	Strong transcription	Brain Cingulate Gyrus	brain
47	chr12:120170400-120173200	Strong transcription	Fetal Muscle Leg	muscle
48	chr12:120170400-120173200	Strong transcription	HepG2	liver
49	chr12:120170400-120173400	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr12:120170400-120173400	Strong transcription	Fetal Thymus	thymus

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