Variant report

Variant	rs7303046
Chromosome Location	chr12:120155411-120155412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:120147560..120151700-chr12:120152140..120156829,4	MCF-7	breast:
2	chr12:120154135..120156051-chr12:120168867..120171241,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122966	Chromatin interaction
ENSG00000221323	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10129003	0.81[ASN][1000 genomes]
rs10849691	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10849692	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11064884	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12296121	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2074052	0.83[ASN][1000 genomes]
rs2285595	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs278110	0.82[ASN][1000 genomes]
rs278139	0.83[ASN][1000 genomes]
rs278142	0.84[ASN][1000 genomes]
rs2936830	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2936831	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2936832	0.96[ASN][1000 genomes]
rs2952403	0.88[ASN][1000 genomes]
rs2952444	0.87[ASN][1000 genomes]
rs2996027	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2996028	0.88[ASN][1000 genomes]
rs2996029	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2996030	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3213625	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3213626	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35070805	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4766946	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4766947	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4767839	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4767841	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7131914	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7132952	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7299963	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7961569	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120108200-120161000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:120116800-120201800	Weak transcription	Fetal Heart	heart
3	chr12:120121200-120173400	Weak transcription	Primary B cells from cord blood	blood
4	chr12:120122200-120160800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr12:120123400-120182000	Strong transcription	Dnd41	blood
6	chr12:120126600-120158000	Weak transcription	Colonic Mucosa	Colon
7	chr12:120130800-120182200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr12:120131200-120161600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr12:120132800-120162000	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr12:120136000-120156000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr12:120137000-120159800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr12:120139600-120159600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr12:120141000-120159600	Strong transcription	Fetal Thymus	thymus
14	chr12:120143600-120160200	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr12:120143800-120159800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr12:120143800-120160800	Strong transcription	Thymus	Thymus
17	chr12:120143800-120211200	Weak transcription	Fetal Brain Male	brain
18	chr12:120144200-120160000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr12:120144400-120160200	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr12:120144600-120159800	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr12:120144800-120159400	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr12:120145000-120158200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr12:120145000-120168600	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr12:120148400-120156000	Weak transcription	Brain Angular Gyrus	brain
25	chr12:120148400-120163400	Weak transcription	Brain Substantia Nigra	brain
26	chr12:120149400-120224800	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr12:120149800-120156000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr12:120151000-120156000	Weak transcription	Lung	lung
29	chr12:120151600-120156000	Weak transcription	Pancreas	Pancrea
30	chr12:120151600-120196600	Weak transcription	Gastric	stomach
31	chr12:120151800-120156000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr12:120151800-120156200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr12:120151800-120208400	Weak transcription	Fetal Brain Female	brain
34	chr12:120151800-120218600	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr12:120152000-120156000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr12:120152000-120156000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr12:120152000-120156400	Weak transcription	Brain Germinal Matrix	brain
38	chr12:120152200-120155800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr12:120152200-120156000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr12:120152200-120156000	Weak transcription	Esophagus	oesophagus
41	chr12:120152600-120156000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr12:120152600-120156000	Weak transcription	Spleen	Spleen
43	chr12:120152600-120165200	Weak transcription	Primary T cells from cord blood	blood
44	chr12:120152800-120159600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr12:120153200-120156000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr12:120153400-120156000	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr12:120153400-120158000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr12:120153800-120156000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr12:120153800-120156000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr12:120154000-120155800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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