Variant report

Variant	rs4462403
Chromosome Location	chr12:120211592-120211593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10459141	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10849696	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11064906	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11064911	0.94[EUR][1000 genomes]
rs12300601	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12302281	0.81[CEU][hapmap]
rs1318272	0.83[GIH][hapmap];0.91[MEX][hapmap]
rs169408	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs175877	0.82[CHB][hapmap]
rs203326	0.86[CHB][hapmap]
rs203328	0.81[ASN][1000 genomes]
rs203329	0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.82[TSI][hapmap];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs203330	0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs203331	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs203332	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs203335	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs203339	0.83[CHB][hapmap]
rs203343	0.84[CHD][hapmap]
rs203352	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs203361	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs203362	0.80[ASN][1000 genomes]
rs203364	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs203366	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs203368	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2074052	0.86[CHB][hapmap];0.84[GIH][hapmap];0.91[MEX][hapmap]
rs2240309	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2240310	0.96[CEU][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes]
rs278142	0.82[CHB][hapmap]
rs2952444	0.86[CHB][hapmap];0.91[MEX][hapmap]
rs2996029	0.82[CHB][hapmap]
rs369180	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3847957	0.96[CEU][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs385844	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3858710	1.00[CEU][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes]
rs385930	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs385959	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs386259	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs386928	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs390366	1.00[CEU][hapmap];0.83[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs393773	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs394155	1.00[CEU][hapmap];0.83[CHB][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs400551	0.92[CEU][hapmap];0.86[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs405300	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs407464	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs407692	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs413236	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs432718	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs433091	1.00[CEU][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes]
rs440299	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4766948	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4766949	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4767839	0.82[CHB][hapmap]
rs4767843	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4767844	0.93[EUR][1000 genomes]
rs574142	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs574155	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6490269	0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs679381	0.87[EUR][1000 genomes]
rs679773	0.85[EUR][1000 genomes]
rs7133437	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7136729	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7294387	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7300010	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7953072	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7961569	0.82[CHB][hapmap]
rs7967982	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7969405	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs804716	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs804717	1.00[CEU][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs904654	0.80[GIH][hapmap];0.86[MEX][hapmap]
rs904655	0.81[GIH][hapmap];0.81[MEX][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4462403	FBXW8	cis	cerebellum	SCAN
rs4462403	DYNLL1	cis	parietal	SCAN

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120149400-120224800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr12:120151800-120218600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr12:120156600-120221400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:120172200-120218600	Weak transcription	Fetal Kidney	kidney
5	chr12:120184200-120224600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr12:120185400-120227200	Strong transcription	Dnd41	blood
7	chr12:120185800-120214800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr12:120186000-120214600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr12:120187600-120218600	Weak transcription	Brain Hippocampus Middle	brain
10	chr12:120188000-120228800	Weak transcription	HSMMtube	muscle
11	chr12:120189400-120225600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr12:120190000-120244800	Weak transcription	Primary B cells from cord blood	blood
13	chr12:120190200-120226400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr12:120191200-120235600	Weak transcription	Colonic Mucosa	Colon
15	chr12:120195600-120223000	Weak transcription	Spleen	Spleen
16	chr12:120197000-120218600	Weak transcription	NHEK	skin
17	chr12:120197200-120223200	Weak transcription	Gastric	stomach
18	chr12:120199200-120241000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr12:120202400-120220200	Weak transcription	Fetal Intestine Small	intestine
20	chr12:120203200-120212600	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr12:120203200-120214600	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr12:120203600-120222400	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr12:120204000-120224800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr12:120205200-120222200	Weak transcription	Esophagus	oesophagus
25	chr12:120206200-120212000	Weak transcription	Small Intestine	intestine
26	chr12:120206200-120214800	Strong transcription	A549	lung
27	chr12:120206400-120214800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr12:120206600-120213600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr12:120206600-120214200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr12:120206600-120214600	Strong transcription	Fetal Thymus	thymus
31	chr12:120206600-120214800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr12:120206600-120214800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr12:120206600-120216200	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr12:120207000-120215400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr12:120207000-120224000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr12:120207200-120211800	Strong transcription	Brain Anterior Caudate	brain
37	chr12:120207200-120213000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr12:120207600-120212400	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr12:120207600-120214800	Strong transcription	Thymus	Thymus
40	chr12:120208200-120214800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr12:120208400-120220800	Weak transcription	NH-A	brain
42	chr12:120208600-120213800	Weak transcription	K562	blood
43	chr12:120208600-120226600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr12:120209000-120213400	Weak transcription	GM12878-XiMat	blood
45	chr12:120209400-120213200	Weak transcription	Fetal Intestine Large	intestine
46	chr12:120209400-120214600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr12:120209400-120293600	Weak transcription	Primary T cells from cord blood	blood
48	chr12:120209600-120220600	Weak transcription	Primary hematopoietic stem cells	blood
49	chr12:120209800-120214200	Weak transcription	HMEC	breast
50	chr12:120209800-120220400	Weak transcription	HepG2	liver

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