Variant report

Variant	rs17588454
Chromosome Location	chr13:30580656-30580657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10492460	0.81[JPT][hapmap]
rs1122694	0.81[ASN][1000 genomes]
rs11616638	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11617050	0.94[ASN][1000 genomes]
rs11617134	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11619623	0.83[EUR][1000 genomes]
rs11620285	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11620467	0.94[ASN][1000 genomes]
rs12428597	0.86[EUR][1000 genomes]
rs28366394	0.94[ASN][1000 genomes]
rs3119823	0.88[ASN][1000 genomes]
rs3119824	0.86[ASN][1000 genomes]
rs35831078	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4534683	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4583075	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4583076	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4769798	0.83[ASN][1000 genomes]
rs4991495	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536937	0.91[ASN][1000 genomes]
rs59372413	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60452760	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60621210	0.99[ASN][1000 genomes]
rs606744	0.87[JPT][hapmap]
rs637375	0.94[ASN][1000 genomes]
rs73159367	0.93[ASN][1000 genomes]
rs73159377	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159380	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159381	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159382	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73159383	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73159384	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73161505	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73161506	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7317000	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7329842	0.95[ASN][1000 genomes]
rs860181	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30577800-30581200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr13:30578000-30581000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr13:30578800-30583000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:30578800-30588200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr13:30579800-30581000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr13:30580200-30581200	Enhancers	Primary T cells from cord blood	blood
7	chr13:30580400-30580800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr13:30580400-30580800	Enhancers	Primary T cells fromperipheralblood	blood
9	chr13:30580400-30580800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr13:30580400-30580800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr13:30580400-30580800	Enhancers	Fetal Thymus	thymus
12	chr13:30580400-30581000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr13:30580400-30581000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr13:30580400-30581000	Enhancers	Thymus	Thymus
15	chr13:30580400-30581600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr13:30580600-30580800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr13:30580600-30580800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr13:30580600-30581000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr13:30580600-30581000	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links