Variant report

Variant	rs73161505
Chromosome Location	chr13:30590379-30590380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11616638	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11617134	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11619623	0.83[EUR][1000 genomes]
rs11620285	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12428597	0.86[EUR][1000 genomes]
rs17588454	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35831078	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4534683	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4583075	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4583076	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4991495	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59372413	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60452760	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60621210	0.84[ASN][1000 genomes]
rs73159377	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73159380	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73159381	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73159382	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73159383	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73159384	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73161506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73161513	0.83[AFR][1000 genomes]
rs7317000	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30581000-30592000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr13:30587200-30593400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:30588800-30594200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:30589400-30590400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:30589400-30590600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr13:30589800-30590400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:30589800-30592000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr13:30589800-30592000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr13:30589800-30593600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr13:30589800-30593800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr13:30589800-30594200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr13:30590000-30592000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr13:30590200-30590400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr13:30590200-30590600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
15	chr13:30590200-30591000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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