Variant report

Variant	rs7317000
Chromosome Location	chr13:30583482-30583483
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30583379..30583896-chr15:70651457..70652331,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10492460	0.81[JPT][hapmap]
rs11616638	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11617050	0.91[ASN][1000 genomes]
rs11617134	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11619623	0.83[EUR][1000 genomes]
rs11620285	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11620467	0.91[ASN][1000 genomes]
rs12428597	0.86[EUR][1000 genomes]
rs17588454	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28366394	0.91[ASN][1000 genomes]
rs3119823	0.85[ASN][1000 genomes]
rs3119824	0.83[ASN][1000 genomes]
rs35831078	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4534683	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4583075	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4583076	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4991495	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs536937	0.87[ASN][1000 genomes]
rs59372413	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60452760	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60621210	0.98[ASN][1000 genomes]
rs606744	0.87[JPT][hapmap]
rs637375	0.91[ASN][1000 genomes]
rs73159367	0.89[ASN][1000 genomes]
rs73159377	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73159380	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73159381	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73159382	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73159383	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73159384	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73161505	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73161506	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7329842	0.92[ASN][1000 genomes]
rs860181	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30578800-30588200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr13:30580800-30586800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:30581000-30592000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr13:30583000-30584200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:30583400-30583800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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