Variant report

Variant	rs17600719
Chromosome Location	chr4:100563999-100564000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100560411..100562122-chr4:100562728..100564350,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10516446	0.83[EUR][1000 genomes]
rs1491241	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17029292	0.86[CEU][hapmap]
rs17598940	1.00[ASN][1000 genomes]
rs3828542	0.86[CEU][hapmap]
rs4699384	0.80[AMR][1000 genomes]
rs56225403	1.00[ASN][1000 genomes]
rs56304620	1.00[ASN][1000 genomes]
rs56938823	1.00[ASN][1000 genomes]
rs6858032	0.93[CEU][hapmap]
rs6858700	0.85[CEU][hapmap]
rs7677213	1.00[ASN][1000 genomes]
rs956201	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100553600-100564200	Weak transcription	Left Ventricle	heart
2	chr4:100553600-100564600	Weak transcription	Psoas Muscle	Psoas
3	chr4:100561800-100567400	Weak transcription	HSMMtube	muscle
4	chr4:100562400-100565000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:100563200-100564800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr4:100563400-100564400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:100563400-100564800	Enhancers	Fetal Heart	heart
8	chr4:100563400-100565000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr4:100563400-100565200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
10	chr4:100563400-100565800	Enhancers	Adipose Nuclei	Adipose
11	chr4:100563400-100567000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr4:100563400-100567600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:100563600-100564200	Enhancers	Liver	Liver
14	chr4:100563600-100564600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:100563600-100565000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
16	chr4:100563600-100565400	Enhancers	Fetal Lung	lung
17	chr4:100563800-100564000	Active TSS	Fetal Muscle Leg	muscle
18	chr4:100563800-100564200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr4:100563800-100564200	Enhancers	Fetal Muscle Trunk	muscle
20	chr4:100563800-100564200	Enhancers	Pancreas	Pancrea
21	chr4:100563800-100564400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr4:100563800-100564800	Enhancers	Stomach Smooth Muscle	stomach
23	chr4:100563800-100565000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr4:100563800-100565400	Enhancers	Rectal Smooth Muscle	rectum
25	chr4:100563800-100565600	Enhancers	HUES6 Cell Line	embryonic stem cell

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