Variant report

Variant	rs4699384
Chromosome Location	chr4:100570681-100570682
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10516446	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11097667	0.84[ASN][1000 genomes]
rs11097669	0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12640855	0.82[ASN][1000 genomes]
rs12643429	0.91[ASN][1000 genomes]
rs12647527	0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12648918	0.89[ASN][1000 genomes]
rs1352777	0.89[ASN][1000 genomes]
rs17029104	0.82[ASN][1000 genomes]
rs17029135	0.84[ASN][1000 genomes]
rs17029142	0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs17029165	0.89[ASN][1000 genomes]
rs17029251	0.87[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs17029277	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17029292	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs17600719	0.80[AMR][1000 genomes]
rs2298747	0.89[ASN][1000 genomes]
rs2306984	0.89[ASN][1000 genomes]
rs3792681	0.87[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs3828542	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4235440	0.89[ASN][1000 genomes]
rs4699385	0.97[ASN][1000 genomes]
rs4699754	0.84[ASN][1000 genomes]
rs4699756	0.89[ASN][1000 genomes]
rs59702776	0.82[ASN][1000 genomes]
rs61074475	0.89[ASN][1000 genomes]
rs6817049	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6858032	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs6858700	0.87[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[AFR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72906793	0.84[ASN][1000 genomes]
rs72908710	0.89[ASN][1000 genomes]
rs72908716	0.89[ASN][1000 genomes]
rs72908742	0.98[ASN][1000 genomes]
rs871321	0.96[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs881980	0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs931465	0.81[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs956200	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100566600-100575800	Weak transcription	Fetal Heart	heart
2	chr4:100567800-100579200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr4:100568600-100575000	Active TSS	HSMMtube	muscle
4	chr4:100569400-100571000	Active TSS	Brain Anterior Caudate	brain
5	chr4:100569400-100571200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr4:100569400-100574800	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
7	chr4:100570000-100571600	Enhancers	Ovary	ovary
8	chr4:100570000-100572000	Transcr. at gene 5' and 3'	Fetal Muscle Trunk	muscle
9	chr4:100570000-100572800	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
10	chr4:100570000-100573200	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
11	chr4:100570200-100575600	Weak transcription	Left Ventricle	heart
12	chr4:100570200-100576200	Weak transcription	Fetal Lung	lung
13	chr4:100570400-100570800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:100570400-100570800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr4:100570400-100570800	Flanking Active TSS	Right Ventricle	heart
16	chr4:100570400-100570800	Enhancers	Spleen	Spleen
17	chr4:100570400-100571000	Flanking Active TSS	Psoas Muscle	Psoas

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