Variant report

Variant	rs17029277
Chromosome Location	chr4:100575711-100575712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10516446	0.88[ASN][1000 genomes]
rs11097667	0.82[ASN][1000 genomes]
rs11097669	0.81[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs12643429	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12647527	0.81[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs12648918	0.88[ASN][1000 genomes]
rs1352777	0.88[ASN][1000 genomes]
rs1491242	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17029135	0.82[ASN][1000 genomes]
rs17029142	0.81[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs17029165	0.88[ASN][1000 genomes]
rs17029251	0.81[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs17029292	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2298747	0.86[ASN][1000 genomes]
rs2306984	0.88[ASN][1000 genomes]
rs3792681	0.81[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs3828542	0.88[CEU][hapmap];0.86[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4235440	0.88[ASN][1000 genomes]
rs4699384	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4699385	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4699754	0.82[ASN][1000 genomes]
rs4699756	0.88[ASN][1000 genomes]
rs61074475	0.88[ASN][1000 genomes]
rs6817049	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6858032	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6858700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72906793	0.82[ASN][1000 genomes]
rs72908710	0.88[ASN][1000 genomes]
rs72908716	0.88[ASN][1000 genomes]
rs72908742	0.96[ASN][1000 genomes]
rs871321	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs881980	0.81[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs931465	0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs956200	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100566600-100575800	Weak transcription	Fetal Heart	heart
2	chr4:100567800-100579200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr4:100570200-100576200	Weak transcription	Fetal Lung	lung
4	chr4:100571000-100576000	Active TSS	Psoas Muscle	Psoas
5	chr4:100571000-100576200	Weak transcription	Brain Anterior Caudate	brain
6	chr4:100572000-100575800	Flanking Active TSS	Fetal Muscle Trunk	muscle
7	chr4:100574200-100576000	Enhancers	Ovary	ovary
8	chr4:100574400-100575800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr4:100574800-100576200	Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr4:100575000-100576000	Flanking Active TSS	HSMMtube	muscle
11	chr4:100575000-100577200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:100575200-100575800	Enhancers	Right Atrium	heart
13	chr4:100575200-100576000	Flanking Active TSS	HSMM	muscle
14	chr4:100575200-100577200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr4:100575400-100575800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr4:100575400-100576000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:100575400-100576000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
18	chr4:100575400-100576600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr4:100575400-100576800	Enhancers	Fetal Brain Male	brain
20	chr4:100575600-100575800	Active TSS	Fetal Muscle Leg	muscle
21	chr4:100575600-100575800	Enhancers	Left Ventricle	heart
22	chr4:100575600-100575800	Enhancers	Lung	lung
23	chr4:100575600-100575800	Flanking Active TSS	Right Ventricle	heart
24	chr4:100575600-100576000	Enhancers	Aorta	Aorta

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