Variant report

Variant	rs871321
Chromosome Location	chr4:100578663-100578664
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100483263..100486375-chr4:100577778..100581735,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138823	Chromatin interaction
ENSG00000145331	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10516446	0.86[ASN][1000 genomes]
rs11097667	0.81[ASN][1000 genomes]
rs11097669	0.81[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs12643429	0.86[ASN][1000 genomes]
rs12647527	0.81[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs12648918	0.86[ASN][1000 genomes]
rs1352777	0.86[ASN][1000 genomes]
rs17029135	0.81[ASN][1000 genomes]
rs17029142	0.81[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs17029165	0.86[ASN][1000 genomes]
rs17029251	0.82[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs17029277	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs17029292	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17535623	0.80[EUR][1000 genomes]
rs2298747	0.86[ASN][1000 genomes]
rs2306984	0.86[ASN][1000 genomes]
rs3792681	0.82[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs3828542	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4235440	0.86[ASN][1000 genomes]
rs4699384	0.94[ASN][1000 genomes]
rs4699385	0.96[ASN][1000 genomes]
rs4699754	0.81[ASN][1000 genomes]
rs4699756	0.86[ASN][1000 genomes]
rs61074475	0.86[ASN][1000 genomes]
rs6817049	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6858032	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6858700	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs72906793	0.81[ASN][1000 genomes]
rs72908710	0.86[ASN][1000 genomes]
rs72908716	0.86[ASN][1000 genomes]
rs72908742	0.95[ASN][1000 genomes]
rs881980	0.81[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs931465	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs956200	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100567800-100579200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr4:100575800-100579800	Weak transcription	Right Atrium	heart
3	chr4:100576000-100579400	Weak transcription	Psoas Muscle	Psoas
4	chr4:100576800-100579200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:100577000-100579000	Active TSS	Right Ventricle	heart
6	chr4:100577000-100579400	Weak transcription	Brain Anterior Caudate	brain
7	chr4:100577000-100579800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:100577200-100579400	Weak transcription	HSMMtube	muscle
9	chr4:100577200-100580200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:100577200-100580600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr4:100577400-100580800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr4:100578000-100579800	Enhancers	Hela-S3	cervix
13	chr4:100578000-100580400	Enhancers	Fetal Heart	heart
14	chr4:100578200-100578800	Enhancers	Ovary	ovary
15	chr4:100578200-100579600	Enhancers	NHEK	skin
16	chr4:100578400-100579600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:100578400-100579800	Enhancers	HMEC	breast
18	chr4:100578600-100578800	Enhancers	Colon Smooth Muscle	Colon
19	chr4:100578600-100579400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr4:100578600-100579600	Weak transcription	Fetal Muscle Leg	muscle

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