Variant report

Variant	rs17535623
Chromosome Location	chr4:100587742-100587743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10516453	1.00[ASN][1000 genomes]
rs13123292	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1491242	1.00[ASN][1000 genomes]
rs17535916	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17608848	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4699759	1.00[ASN][1000 genomes]
rs56291001	1.00[ASN][1000 genomes]
rs58575263	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58961259	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532828	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6835927	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73832847	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs871321	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100580000-100600400	Weak transcription	Psoas Muscle	Psoas
2	chr4:100585600-100588800	Enhancers	Fetal Lung	lung
3	chr4:100586000-100588000	Enhancers	Ovary	ovary
4	chr4:100586000-100588200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr4:100586000-100588200	Enhancers	Fetal Heart	heart
6	chr4:100586600-100587800	Enhancers	Stomach Smooth Muscle	stomach
7	chr4:100586800-100587800	Enhancers	Fetal Kidney	kidney
8	chr4:100586800-100587800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:100586800-100589400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr4:100587200-100587800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:100587400-100587800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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