Variant report

Variant	rs4699759
Chromosome Location	chr4:100636812-100636813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10516453	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13123292	0.83[AMR][1000 genomes]
rs1491242	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17029292	1.00[CEU][hapmap]
rs17535623	1.00[ASN][1000 genomes]
rs17535916	1.00[ASN][1000 genomes]
rs17608848	0.83[AMR][1000 genomes]
rs2866168	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3828542	0.88[CEU][hapmap]
rs56184565	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56291001	1.00[ASN][1000 genomes]
rs58575263	1.00[ASN][1000 genomes]
rs58961259	1.00[ASN][1000 genomes]
rs6532828	0.83[AMR][1000 genomes]
rs6835927	1.00[ASN][1000 genomes]
rs6858032	1.00[CEU][hapmap]
rs6858700	1.00[CEU][hapmap]
rs73832847	1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4699759	H2AFZ	cis	cerebellum	SCAN
rs4699759	EMCN	cis	parietal	SCAN
rs4699759	MANBA	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100632800-100637600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr4:100633000-100638200	Weak transcription	Hela-S3	cervix
3	chr4:100635600-100638200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:100635800-100637400	Enhancers	Primary hematopoietic stem cells	blood
5	chr4:100635800-100638800	Enhancers	Fetal Intestine Large	intestine
6	chr4:100635800-100638800	Enhancers	Fetal Intestine Small	intestine
7	chr4:100636000-100638000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:100636000-100638600	Enhancers	Psoas Muscle	Psoas
9	chr4:100636200-100637000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:100636200-100637200	Enhancers	NHEK	skin
11	chr4:100636200-100637400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:100636200-100638400	Enhancers	Duodenum Mucosa	Duodenum
13	chr4:100636400-100637000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:100636400-100637000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr4:100636400-100637200	Enhancers	HMEC	breast
16	chr4:100636600-100637200	Weak transcription	Left Ventricle	heart
17	chr4:100636600-100640600	Weak transcription	Adipose Nuclei	Adipose
18	chr4:100636600-100646600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr4:100636800-100637800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr4:100636800-100640600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr4:100636800-100641000	Weak transcription	Colon Smooth Muscle	Colon

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