Variant report

Variant	rs13123292
Chromosome Location	chr4:100642113-100642114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100507860..100509548-chr4:100642042..100643826,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17535623	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17535916	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17608848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2866168	0.83[AMR][1000 genomes]
rs4699759	0.83[AMR][1000 genomes]
rs56184565	0.83[AMR][1000 genomes]
rs58575263	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58961259	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6532828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6835927	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73832847	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs871321	0.95[CEU][hapmap]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100636600-100646600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:100637800-100643400	Weak transcription	Left Ventricle	heart
3	chr4:100638000-100643000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:100638200-100643800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:100638400-100642800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:100638600-100642800	Weak transcription	Hela-S3	cervix
7	chr4:100638600-100643400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr4:100638600-100643400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:100638600-100643400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:100638600-100643400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:100638600-100644200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:100638600-100644200	Weak transcription	Psoas Muscle	Psoas
13	chr4:100638800-100643400	Weak transcription	Fetal Intestine Large	intestine
14	chr4:100640600-100642600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr4:100641200-100643400	Weak transcription	Fetal Heart	heart
16	chr4:100641200-100645400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr4:100641200-100646000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr4:100641600-100643000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr4:100641600-100643000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr4:100641600-100643200	Weak transcription	Ovary	ovary
21	chr4:100641600-100643600	Weak transcription	Adipose Nuclei	Adipose
22	chr4:100641600-100644000	Weak transcription	Colon Smooth Muscle	Colon
23	chr4:100641600-100644000	Weak transcription	HSMMtube	muscle
24	chr4:100641800-100642200	Weak transcription	Fetal Lung	lung
25	chr4:100641800-100642200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr4:100641800-100642800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr4:100642000-100642400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr4:100642000-100643400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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