Variant report

Variant	rs58961259
Chromosome Location	chr4:100605180-100605181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10516453	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13123292	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1491242	1.00[ASN][1000 genomes]
rs17535623	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17535916	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17608848	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4699759	1.00[ASN][1000 genomes]
rs56291001	1.00[ASN][1000 genomes]
rs58575263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532828	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6835927	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73832847	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100601600-100608200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr4:100603800-100605400	Enhancers	Fetal Heart	heart
3	chr4:100604600-100605400	Enhancers	Fetal Muscle Trunk	muscle
4	chr4:100605000-100605400	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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