Variant report

Variant	rs73832847
Chromosome Location	chr4:100589861-100589862
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10516453	1.00[ASN][1000 genomes]
rs13123292	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1491242	1.00[ASN][1000 genomes]
rs17535623	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17535916	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17608848	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4699759	1.00[ASN][1000 genomes]
rs56291001	1.00[ASN][1000 genomes]
rs58575263	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58961259	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532828	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6835927	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100580000-100600400	Weak transcription	Psoas Muscle	Psoas
2	chr4:100588200-100590400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr4:100588200-100591400	Weak transcription	Fetal Heart	heart
4	chr4:100588800-100591200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:100589400-100590000	Enhancers	Left Ventricle	heart
6	chr4:100589400-100590200	Enhancers	Fetal Lung	lung
7	chr4:100589400-100590800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr4:100589800-100590200	Weak transcription	Ovary	ovary
9	chr4:100589800-100590200	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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