Variant report

Variant	rs3792681
Chromosome Location	chr4:100510768-100510769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100510715..100513886-chr4:100514964..100518319,3	MCF-7	breast:
2	chr4:100482078..100484987-chr4:100507719..100510909,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138823	Chromatin interaction
ENSG00000145331	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10516446	0.98[ASN][1000 genomes]
rs11097667	0.94[ASN][1000 genomes]
rs11097669	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12640855	0.91[ASN][1000 genomes]
rs12643429	0.98[ASN][1000 genomes]
rs12647527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12648918	1.00[ASN][1000 genomes]
rs1352777	1.00[ASN][1000 genomes]
rs17029104	0.91[ASN][1000 genomes]
rs17029135	0.94[ASN][1000 genomes]
rs17029142	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17029165	1.00[ASN][1000 genomes]
rs17029251	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17029277	0.88[ASN][1000 genomes]
rs17029292	0.81[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2298747	0.99[ASN][1000 genomes]
rs2306984	1.00[ASN][1000 genomes]
rs3828542	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs4235440	1.00[ASN][1000 genomes]
rs4699384	0.89[ASN][1000 genomes]
rs4699385	0.86[ASN][1000 genomes]
rs4699754	0.94[ASN][1000 genomes]
rs4699756	1.00[ASN][1000 genomes]
rs59702776	0.91[ASN][1000 genomes]
rs61074475	1.00[ASN][1000 genomes]
rs6817049	0.87[ASN][1000 genomes]
rs6858032	0.81[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs6858700	0.82[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs72906793	0.94[ASN][1000 genomes]
rs72908710	1.00[ASN][1000 genomes]
rs72908716	1.00[ASN][1000 genomes]
rs72908742	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs871321	0.82[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs881980	1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs931465	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs956200	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879656	chr4:99976646-100533722	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3410965	chr4:100509154-100511252	Enhancers Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100506200-100516000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:100506800-100510800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:100507800-100533800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr4:100508800-100514000	Strong transcription	HepG2	liver
5	chr4:100509000-100511400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr4:100509000-100516000	Weak transcription	Aorta	Aorta
7	chr4:100509800-100518200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:100510400-100511600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:100510400-100514000	Strong transcription	Liver	Liver
10	chr4:100510600-100511600	Strong transcription	Fetal Intestine Small	intestine
11	chr4:100510600-100514600	Strong transcription	Fetal Intestine Large	intestine

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