Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100583097..100585455-chr4:100593424..100595570,2	MCF-7	breast:
2	chr4:100578815..100580897-chr4:100583888..100586485,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11936303	0.86[EUR][1000 genomes]
rs12648843	0.86[EUR][1000 genomes]
rs13112253	0.81[CEU][hapmap]
rs13130068	0.88[EUR][1000 genomes]
rs13130949	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs1352775	0.95[CEU][hapmap];0.91[GIH][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs1491241	1.00[ASN][1000 genomes]
rs17598940	1.00[ASN][1000 genomes]
rs17600719	1.00[ASN][1000 genomes]
rs1948353	0.86[EUR][1000 genomes]
rs2866167	0.86[EUR][1000 genomes]
rs34849574	0.80[EUR][1000 genomes]
rs56225403	1.00[ASN][1000 genomes]
rs56304620	1.00[ASN][1000 genomes]
rs56938823	1.00[ASN][1000 genomes]
rs6831328	0.86[EUR][1000 genomes]
rs6832692	0.88[EUR][1000 genomes]
rs6840719	0.88[EUR][1000 genomes]
rs6852647	0.82[EUR][1000 genomes]
rs7677594	0.86[EUR][1000 genomes]
rs7678889	0.91[EUR][1000 genomes]
rs956201	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933074	chr4:100460951-100630600	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100580000-100586000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr4:100580000-100600400	Weak transcription	Psoas Muscle	Psoas
3	chr4:100580200-100586000	Weak transcription	Ovary	ovary
4	chr4:100580600-100586600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr4:100583600-100586000	Weak transcription	Fetal Heart	heart

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